Factsheet for Solyc05g014790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 3

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034472	Potato	cytosol	47.64	97.09
PGSC0003DMT400045047	Potato	cytosol, plastid	96.05	96.15
VIT_01s0010g02750.t01	Wine grape	plastid	74.09	73.37
KRH42646	Soybean	plastid	70.14	69.38
GSMUA_Achr6P28450_001	Banana	plastid	60.7	63.56
Bra004081.1-P	Field mustard	plastid	62.24	61.76
CDY07417	Canola	plastid	62.24	61.76
CDY51606	Canola	plastid	61.47	61.34
Bra033991.1-P	Field mustard	plastid	61.36	61.23
CDY12655	Canola	plastid	61.14	61.01
AT1G67560.1	Thale cress	plastid	60.59	60.2
Solyc01g009680.2.1	Tomato	plastid	26.89	55.3
Solyc03g122340.2.1	Tomato	cytosol	53.24	53.41
CDY28879	Canola	cytosol, endoplasmic reticulum, plastid	62.35	50.71
Solyc01g006540.2.1	Tomato	plastid	46.65	47.43
Solyc01g006560.2.1	Tomato	plastid	46.32	46.78
Solyc12g011040.1.1	Tomato	nucleus, plastid	44.68	45.63
Solyc09g055900.2.1	Tomato	cytosol	22.5	44.37
Solyc01g099200.2.1	Tomato	cytosol, plastid	40.61	44.0
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	40.72	43.04
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	40.18	42.51
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	39.96	42.42
Solyc01g099210.2.1	Tomato	cytosol	40.07	42.29
Solyc01g099180.2.1	Tomato	cytosol	39.52	42.15
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	39.52	41.86
Solyc09g075860.2.1	Tomato	cytosol, nucleus	39.41	40.94
Solyc09g075870.1.1	Tomato	cytosol	37.65	40.16
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	19.1	34.05
Solyc01g099150.2.1	Tomato	nucleus	30.52	32.25
Solyc09g055890.2.1	Tomato	cytosol	11.2	27.49

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0006629	GO:GO:0006633
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009611	GO:GO:0009695	GO:GO:0009987	GO:GO:0016020	GO:GO:0016165	GO:GO:0016491
GO:GO:0016702	GO:GO:0031408	GO:GO:0034440	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	UniProt:K4BYJ7	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF60	SMART:SM00308
SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:Solyc05g014790.2	EnsemblPlants:Solyc05g014790.2.1	UniParc:UPI00027666C1	:

Description

Lipoxygenase 6, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G67560) UniProtKB/Swiss-Prot;Acc:Q9CAG3]

Coordinates

chr5:-:8966270..8971035

Molecular Weight (calculated)

103667.0 Da

IEP (calculated)

8.766

GRAVY (calculated)

-0.421

Length

911 amino acids

Sequence
(BLAST)

001: MFTAVQSRST PVSSEIQHVF SIRRRKISQI CRYNRSCFKV KAVIQSGNDN KTVKDANFME KSMEESNRLL VSSGKARDVK AVVTLRKKMK EKISDKIEDQ
101: WESLMNGIGK GILIQLISQD IDPVTKSGKF AESYVRGWLS KPSDHPHIVE YAANLTVPHD FGRPGAIIIT NLLDKEIHLV QIVVHGFNEG PVFFSVNTWI
201: HSQKDNPESR IIFQNQAYLP SQTPPGIKDL RREDLLSIRG NGKGERKLHE RIYDYDVYND LGNPDKSEDL ARPLLGGKEK PYPRRCRTGR GPTKKDPLAE
301: RRIEKPHPVY VPRDETFEEI KQNTFSAGRL KALLHNLVPL IAATLSSSDI PFTNFTDIDK LYKDGVVLND DNDPQKNNFL SEMLEKVFSV SKRLLKYEIP
401: AIIRRDRFAW LRDNEFARQA LAGVNPVNIE LLREFPIVSK LDPAVYGPPD SAITRDVIEQ ELNGMSVEEA IQAKRLFILD YHDMLLPFIG KMNSLPGRKA
501: YASRTLFFYT SRGVLKPIIV ELSLPPTPSS ARNKRIFSHG QDATNHWIWN LAKAHVCSND AGVHQLVNHW LRTHACMEPY IIASHRHLSS LHPIYKLLHP
601: HMRYTLEINA LARQSLINGG GVIEACFSPG RYSMEISSAA YKSMWRFDME ALPADLIRRG MAVEDTSMPL GVKLVIEDYP YAADGLLIWS AIKEYVESYV
701: DHYYSEPNSV TSDVELQGWW NEIKNKGHAD KKNETWWPKL VTKEDLSGIL TTMIWTASGQ HAAINFGQYP FGGYVPNRPT IMRKLIPHED DPSYENFILH
801: PEYTFLASLP TQLQATKVMA VQDTLSTHSA DEEYMYQLHE IQQFSINDHE VLKILKRFSA KLKEIEDTIN QRNKDIRLKN RSGAGVPPYE LLLPTSGPGV
901: TCRGIPNSIS I

Best Arabidopsis Sequence Match ( AT1G67560.1 )
(BLAST)

001: MFVASPVKTN FNGVSLVKSP AFSALSCRKQ HRVPISRQVR AVISREEKAV DQEDGKKSTN KPLINSSQFP WQRSKYTGSK TVTAVVKIRK KIKEKLTERF
101: EHQLELFMKA IGQGMLIQLV SEEIDPETGK GRKSLESPVM GLPKAVKDPR YLVFTADFTV PINFGKPGAI LVTNLLSTEI CLSEIIIEDS TDTILFPANT
201: WIHSKNDNPQ ARIIFRSQPC LPSETPDGIK ELREKDLVSV RGDGKGERKP HERIYDYDVY NDLGDPRKTE RVRPVLGVPE TPYPRRCRTG RPLVSKDPPC
301: ESRGKEKEEF YVPRDEVFEE IKRDTFRAGR FKALFHNLVP SIAAALSNLD IPFTCFSDID NLYKSNIVLG HTEPKDTGLG GFIGGFMNGI LNVTETLLKY
401: DTPAVIKWDR FAWLRDNEFG RQALAGVNPV NIELLKELPI RSNLDPALYG PQESVLTEEI IAREVEHYGT TIEKALEEKR LFLVDYHDIL LPFVEKINSI
501: KEDPRKTYAS RTIFFYSKNG ALRPLAIELS LPPTAESENK FVYTHGHDAT THWIWKLAKA HVCSNDAGVH QLVNHWLRTH ASMEPYIIAT NRQLSTMHPV
601: YKLLHPHMRY TLEINARARK SLINGGGIIE SCFTPGKYAM ELSSAAYKSM WRFDMEGLPA DLVRRGMAEE DSSAECGVRL VIDDYPYAAD GLLIWKAIKD
701: LVESYVKHFY SDSKSITSDL ELQAWWDEIK NKGHYDKKDE PWWPKLNTTQ DLSQILTNMI WIASGQHAAI NFGQYPFGGY VPNRPTLLRK LIPQETDPDY
801: EMFMRNPQYS FLGSLPTQLQ ATKVMAVQET LSTHSPDEEY LIELREVQRH WFQDEQVVKY FNKFSEELVK IEKTINERNK DKKLKNRTGA GMPPYELLLP
901: TSPHGVTGRG IPNSISI

Arabidopsis Description

LOX6Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178W1Z8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.