Factsheet for Solyc12g011040.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g090580.2.1
Solyc10g080660.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	Solyc10g080660.1.1	AT5G18110.1	11117257
AT3G45140.1	Solyc09g090580.2.1	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020118	Potato	cytosol	72.2	92.93
Solyc01g009680.2.1	Tomato	plastid	41.03	82.62
Solyc01g006540.2.1	Tomato	plastid	78.36	78.01
Solyc01g006560.2.1	Tomato	plastid	75.45	74.61
Os12t0559934-00	Rice	cytosol	15.13	69.23
VIT_06s0004g01500.t01	Wine grape	cytosol	56.84	64.1
CDY61034	Canola	cytosol	31.95	63.76
CDY07409	Canola	cytosol	27.58	63.57
CDY72550	Canola	cytosol	22.87	63.55
VIT_06s0004g01480.t01	Wine grape	cytosol	56.05	63.05
HORVU3Hr1G047210.1	Barley	cytosol	15.13	62.21
VIT_06s0004g01460.t01	Wine grape	plastid	40.92	61.04
VIT_06s0004g01510.t01	Wine grape	plastid	60.87	60.27
VIT_06s0004g01470.t01	Wine grape	cytosol	59.87	59.14
KRH24671	Soybean	cytosol, plastid	60.54	59.08
KRH29669	Soybean	plastid	59.53	58.93
KRH29668	Soybean	nucleus	59.53	58.61
KRG89883	Soybean	cytosol, plastid	55.94	58.09
CDY61881	Canola	cytosol	23.09	58.03
CDY70843	Canola	cytosol	8.18	57.94
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	53.92	56.0
KRG89889	Soybean	cytosol, plastid	53.81	55.81
GSMUA_Achr3P11780_001	Banana	plastid	52.91	55.79
KRH18682	Soybean	cytosol, mitochondrion	56.5	55.32
KRG89888	Soybean	nucleus	55.61	54.93
GSMUA_Achr9P12470_001	Banana	plastid	51.79	54.8
KRH17965	Soybean	plastid	56.39	54.79
CDX79416	Canola	plastid	53.59	52.88
CDX67920	Canola	plastid	53.48	52.77
CDX91565	Canola	plastid	53.14	52.67
Bra003526.1-P	Field mustard	plastid	53.36	52.65
OQU80925	Sorghum	cytosol	50.9	52.49
AT3G45140.1	Thale cress	plastid	52.69	52.46
CDY04196	Canola	plastid	51.79	51.97
Zm00001d053675_P001	Maize	plastid	52.58	51.82
Bra004057.1-P	Field mustard	cytosol	51.68	51.74
HORVU6Hr1G033600.1	Barley	plastid	51.91	51.67
CDY16339	Canola	plastid	44.06	51.64
TraesCS6B01G193400.1	Wheat	plastid	51.79	51.28
TraesCS6D01G154600.1	Wheat	plastid	51.57	51.05
Bra004059.1-P	Field mustard	plastid	49.55	51.04
TraesCS6A01G166000.1	Wheat	golgi	51.46	50.94
Bra022535.1-P	Field mustard	plastid	46.3	50.92
HORVU7Hr1G050680.1	Barley	peroxisome	39.01	50.88
Os02t0194700-01	Rice	plasma membrane	52.47	50.54
TraesCS4D01G347300.1	Wheat	cytosol	50.0	50.4
KXG29701	Sorghum	plastid	51.79	50.38
Zm00001d015852_P004	Maize	plastid	51.12	50.05
Bra004060.1-P	Field mustard	plastid	50.22	49.83
CDY61036	Canola	plastid	49.66	49.83
TraesCS7D01G029400.1	Wheat	cytosol	14.69	49.43
TraesCS7D01G244800.1	Wheat	plastid	51.57	49.36
TraesCS7B01G145200.1	Wheat	plastid	51.23	49.25
TraesCS7A01G246200.1	Wheat	plastid	51.35	49.19
Os08t0508800-01	Rice	nucleus, plasma membrane	50.45	48.7
TraesCS6B01G014400.1	Wheat	cytosol	32.06	47.59
Os08t0509100-01	Rice	nucleus	49.89	47.29
Zm00001d031449_P001	Maize	mitochondrion	50.67	47.28
TraesCS5D01G013400.1	Wheat	plastid	48.54	46.66
TraesCS5B01G006500.1	Wheat	plastid	48.54	46.66
TraesCS5A01G007900.1	Wheat	plastid	48.43	46.55
HORVU5Hr1G001180.1	Barley	plastid	48.43	46.4
HORVU6Hr1G000510.1	Barley	plastid	47.09	45.06
TraesCS7A01G034900.1	Wheat	mitochondrion	14.8	45.05
HORVU7Hr1G006320.4	Barley	plastid	46.75	44.98
CDY61880	Canola	plastid	27.69	44.83
Os12t0559200-01	Rice	plastid	46.19	44.69
Solyc05g014790.2.1	Tomato	plastid	45.63	44.68
Solyc09g055900.2.1	Tomato	cytosol	22.87	44.16
Bra004058.1-P	Field mustard	plastid	52.13	43.95
TraesCS6D01G010100.1	Wheat	plastid	45.52	43.24
Solyc03g122340.2.1	Tomato	cytosol	43.5	42.73
TraesCS5B01G033000.1	Wheat	plastid	45.4	42.63
TraesCS5D01G041100.1	Wheat	plastid	44.96	42.43
CDY07407	Canola	cytosol, plastid	52.13	42.39
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	40.7	42.21
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	40.47	41.93
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	39.24	40.6
Solyc01g099210.2.1	Tomato	cytosol	39.24	40.56
Solyc09g075870.1.1	Tomato	cytosol	38.45	40.16
Solyc01g099180.2.1	Tomato	cytosol	38.34	40.05
CDY70245	Canola	plastid	20.52	39.96
CDY07408	Canola	plastid	20.52	39.96
Solyc01g099200.2.1	Tomato	cytosol, plastid	37.44	39.71
Os12t0560200-00	Rice	cytosol	4.37	39.39
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	37.67	39.16
Solyc09g075860.2.1	Tomato	cytosol, nucleus	38.34	39.0
TraesCS5A01G032800.1	Wheat	mitochondrion	36.66	38.07
CDY70606	Canola	plastid	16.03	36.2
CDY61882	Canola	plastid	15.7	36.18
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	18.61	32.49
Solyc01g099150.2.1	Tomato	nucleus	29.48	30.51
Solyc09g055890.2.1	Tomato	cytosol	10.87	26.15

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	UniProt:K4DCJ0	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:Solyc12g011040.1
EnsemblPlants:Solyc12g011040.1.1	UniParc:UPI000276A181	SEG:seg	:	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:K4DCJ0]

Coordinates

chr12:-:3894074..3904280

Molecular Weight (calculated)

101710.0 Da

IEP (calculated)

6.949

GRAVY (calculated)

-0.407

Length

892 amino acids

Sequence
(BLAST)

001: MLKSHLQQST KSLIPWSTKP FDFSREILDF FPINILSKNH RKNKKNNNFI VHYNVAKSTK AVLGSTKKSM GVKVVVKVQK SVGGTNLGLS RGLDDLLGKS
101: LLLWIVAAEL DPMTGIEKPS IRIFANRGRD VDGETHYEAN FVFPKDFGDV GAILVENEHK EMYVKNIVID GKITITCNSW VHTKFEKRIF FTNKSYIPSQ
201: TPNGIKRLRE KELVTLRGDG FGERKKYERI YDYDVYNDIG DSTDNDNGDN KRPVLGGKQL PYPRRCRTGR SRSNKDPLSE LKSDFVYVPR DEEFSEVKSL
301: TFSGNPIFSV LQAVVPALET VTSDSDHEFS QTPSIDSLFN VGVDVSRQGN KKNGMFKVVP MLIKVMSDTQ KNVSLFETPQ LLQRDKLSWL GDVEFARQTL
401: SGFNPFSIRL VTEWPLKSKL SPEVYGPPES AMTKELIELE IGGSMTVEEA VQQKKLFILD YHDLLLPYVN KVNELKKTIL YGSRTLFFLT HEGTLRPLAI
501: ELTRPPIDNK PQWKQAYFPS TWNATGAWLW KLAKTHVLAH DSGYHQLVSH WLRTHCATEP YIIATNRQLS AMHPIYRLLH PHFRHTMKIN SLAREALINA
601: NGIIETSFSL GKYAMEFSSV AYDLEWRFDQ EALPQNLISR GLAVEDPNEP YGLKLTIEDY PFANDGLILW DTLKQWVTNY VNHYYPQINL IESDIEIQAW
701: WSEIKNVGHG DKKNEPWWPE LKTPNDLIGI ITTMIWVTSG HHAAVNFGQY IYADYFPNRP TIARTKMPTE DPTNEEWENF LNKPEEALIK CLPSQLQATK
801: ITAIMDVLSN HAPDEEYIGD KIEPYWAEDP VINAAFEVFS EKLKELEGII DARNVDSKLM NRNGAGVMPY ELLKPFSEPG VTGKGVPYSI SI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.