Factsheet for VIT_06s0004g01500.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g01480.t01	Wine grape	cytosol	89.0	88.78
VIT_06s0004g01460.t01	Wine grape	plastid	56.13	74.25
VIT_13s0064g01500.t01	Wine grape	cytosol	23.39	74.0
Solyc01g009680.2.1	Tomato	plastid	40.96	73.14
VIT_06s0004g01470.t01	Wine grape	cytosol	83.06	72.76
VIT_13s0064g01490.t01	Wine grape	cytosol	34.64	68.67
PGSC0003DMT400020118	Potato	cytosol	58.91	67.24
Os12t0559934-00	Rice	cytosol	16.56	67.18
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	72.69	66.94
VIT_06s0004g01510.t01	Wine grape	plastid	75.09	65.93
HORVU3Hr1G047210.1	Barley	cytosol	17.07	62.21
VIT_13s0064g01480.t01	Wine grape	plastid	70.16	61.46
KRH29669	Soybean	plastid	68.02	59.71
PGSC0003DMT400081909	Potato	plastid	67.26	59.18
Solyc01g006540.2.1	Tomato	plastid	66.88	59.04
KRG89883	Soybean	cytosol, plastid	63.59	58.56
KRG89889	Soybean	cytosol, plastid	63.08	58.02
Solyc01g006560.2.1	Tomato	plastid	65.99	57.87
KRH29668	Soybean	nucleus	65.74	57.4
GSMUA_Achr3P11780_001	Banana	plastid	61.31	57.33
KRH24671	Soybean	cytosol, plastid	65.99	57.11
Solyc12g011040.1.1	Tomato	nucleus, plastid	64.1	56.84
HORVU7Hr1G050680.1	Barley	peroxisome	48.93	56.58
KRG89888	Soybean	nucleus	64.35	56.37
KRH18682	Soybean	cytosol, mitochondrion	63.84	55.43
GSMUA_Achr9P12470_001	Banana	plastid	59.04	55.4
KRH17965	Soybean	plastid	64.1	55.23
OQU80925	Sorghum	cytosol	59.8	54.68
TraesCS6B01G014400.1	Wheat	cytosol	40.46	53.24
TraesCS7A01G034900.1	Wheat	mitochondrion	19.6	52.9
TraesCS7D01G029400.1	Wheat	cytosol	17.7	52.83
TraesCS4D01G347300.1	Wheat	cytosol	58.28	52.09
VIT_00s0265g00170.t01	Wine grape	cytosol	33.25	52.08
Os08t0508800-01	Rice	nucleus, plasma membrane	60.68	51.95
Os08t0509100-01	Rice	nucleus	61.06	51.33
TraesCS7B01G145200.1	Wheat	plastid	59.17	50.43
TraesCS7D01G244800.1	Wheat	plastid	59.42	50.43
TraesCS7A01G246200.1	Wheat	plastid	59.17	50.27
Zm00001d053675_P001	Maize	plastid	57.4	50.17
HORVU6Hr1G033600.1	Barley	plastid	56.38	49.78
Zm00001d015852_P004	Maize	plastid	56.76	49.29
Zm00001d031449_P001	Maize	mitochondrion	59.54	49.27
Os02t0194700-01	Rice	plasma membrane	57.65	49.24
KXG29701	Sorghum	plastid	57.02	49.18
TraesCS6B01G193400.1	Wheat	plastid	55.88	49.06
TraesCS6D01G154600.1	Wheat	plastid	55.5	48.72
TraesCS6A01G166000.1	Wheat	golgi	55.5	48.72
TraesCS5D01G013400.1	Wheat	plastid	56.26	47.95
HORVU5Hr1G001180.1	Barley	plastid	56.38	47.91
TraesCS5A01G007900.1	Wheat	plastid	56.01	47.74
TraesCS5B01G006500.1	Wheat	plastid	55.88	47.63
HORVU7Hr1G006320.4	Barley	plastid	53.73	45.85
HORVU6Hr1G000510.1	Barley	plastid	53.48	45.39
TraesCS6D01G010100.1	Wheat	plastid	53.86	45.37
Os12t0559200-01	Rice	plastid	52.09	44.69
TraesCS5D01G041100.1	Wheat	plastid	53.35	44.66
VIT_01s0010g02750.t01	Wine grape	plastid	51.83	44.57
Os12t0560200-00	Rice	cytosol	5.56	44.44
TraesCS5B01G033000.1	Wheat	plastid	52.97	44.11
VIT_06s0004g01580.t01	Wine grape	cytosol	18.46	43.58
VIT_14s0128g00780.t01	Wine grape	cytosol	46.27	42.61
VIT_14s0128g00790.t01	Wine grape	cytosol	46.14	42.0
VIT_09s0002g01080.t01	Wine grape	cytosol	48.8	41.64
VIT_05s0020g03170.t01	Wine grape	cytosol	45.51	41.1
TraesCS5A01G032800.1	Wheat	mitochondrion	43.36	39.93
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	29.84	36.99
VIT_07s0289g00010.t01	Wine grape	cytosol	21.37	35.43

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100255333	wikigene:100255333	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60
Gene3D:4.10.372.10	Gene3D:4.10.375.10	EMBL:AM463044	ProteinID:CAN81242	ProteinID:CAN81242.1	ProteinID:CCB43747
ProteinID:CCB43747.1	UniProt:F6GUA5	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	EntrezGene:LOC100255333	wikigene:LOC100255333
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant
InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087
PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000210894C	ArrayExpress:VIT_06s0004g01500
EnsemblPlantsGene:VIT_06s0004g01500	EnsemblPlants:VIT_06s0004g01500.t01	RefSeq:XP_002283123	RefSeq:XP_002283123.1	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:F6GUA5]

Coordinates

chr6:+:1860596..1868697

Molecular Weight (calculated)

89738.8 Da

IEP (calculated)

5.691

GRAVY (calculated)

-0.388

Length

791 amino acids

Sequence
(BLAST)

001: MANWIIDTGL EKKPIGRYAH RVGQKDGEAI YESNFEIPGD FGEIGAVLVQ NELRNEMYLK YIVLNGLPSG PIAFNCGSWV ESKFDNPEKR IFFSNKSCLP
101: LQTPRGLKGM REKELASLRG NGEGERKTSD RIYDYGVYND LGNPDSKSEL GRPVLGGSKN FPYPRRCRTG RPRSKTDPHS ETRSGTFYVP RDEEFSEVKE
201: ASFITKTADS VLHALIPSLE TSLLDSNLGF PLFSDIDQLY KEGITIPKLK NQGLLRRVLP RLVKAVSEAK DDIVKFDSPA MFQRDKFSWF RDEEFSRQTL
301: AGVNPYSIKL VMEWPLKSGL APDVYGPPES AITTELVERE IKGFMTVDEA LEQKKLFIID YHDLLLPYVS KVRQIEGTTL YGSRALFFLT PDCTLKPLAI
401: ELTRPPMDGK PQWKQVFTPS LEATGCWLWR FAKAHFLAHD SGYHELVSHW LRTHCATEPY IIATNRQLSA MHPIYKLLHP HFRYTMQINA LARQALINAD
501: GIIETSFSPS KYSMELSSVA YDQLWRFDKE ALPADLINRG IAVEDPTAPH GLKLLIEDYP FANDGLILWD ALKQWVADYV NYYYKDASMV QSDPELQAWW
601: TEIRTKGHED KKDEPWWPVL KTPEDLIGII TTIVWVASAH DSAVNFGQYA FAGYFPNRPT IARTNMPSED PTREGWKRFL DNPEFELLVC FPSQIQATKV
701: MAILDVLSNH SPDEEYLGEH MEPAWGEEPV IKEAFERFSA KLKELGVIID SRNADDSLKN RGGAGVVPYE LLKPFSEAGV TGKGVPYSIS I

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.