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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plastid
BaCelLo:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
plastid: 10998053
plastid: 21433289
gfp PMID: 10998053 doi
U Schaffrath, F Zabbai, R Dudler
Institute of Biology III, RWTH Aachen, Germany; Institute of Plant Biology, University of Zurich, Switzerland.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
PPI

Inferred distinct locusB in Crop

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os12t0559934-00 Rice cytosol 21.15 100.0
Os12t0560200-00 Rice cytosol 9.33 86.87
HORVU3Hr1G047210.1 Barley cytosol 17.57 74.65
TraesCS7D01G029400.1 Wheat cytosol 18.76 65.28
TraesCS6B01G014400.1 Wheat cytosol 41.21 63.23
TraesCS7A01G034900.1 Wheat mitochondrion 19.96 62.8
CDY61034 Canola cytosol 29.61 61.07
TraesCS5D01G013400.1 Wheat plastid 60.85 60.45
TraesCS5B01G006500.1 Wheat plastid 60.85 60.45
TraesCS5A01G007900.1 Wheat plastid 60.74 60.34
Solyc01g009680.2.1 Tomato plastid 28.63 59.59
HORVU5Hr1G001180.1 Barley plastid 60.09 59.51
HORVU6Hr1G000510.1 Barley plastid 59.65 59.01
CDY07409 Canola cytosol 24.73 58.91
CDY72550 Canola cytosol 20.17 57.94
HORVU7Hr1G006320.4 Barley plastid 58.13 57.82
VIT_13s0064g01500.t01 Wine grape cytosol 15.62 57.6
TraesCS5B01G033000.1 Wheat plastid 58.79 57.05
VIT_13s0064g01490.t01 Wine grape cytosol 24.62 56.89
TraesCS6D01G010100.1 Wheat plastid 57.7 56.66
TraesCS5D01G041100.1 Wheat plastid 57.59 56.19
PGSC0003DMT400020118 Potato cytosol 40.89 54.4
VIT_06s0004g01480.t01 Wine grape cytosol 45.55 52.96
CDY61881 Canola cytosol 20.17 52.39
VIT_06s0004g01460.t01 Wine grape plastid 33.95 52.34
VIT_06s0004g01500.t01 Wine grape cytosol 44.69 52.09
TraesCS5A01G032800.1 Wheat mitochondrion 47.61 51.11
VIT_13s0064g01480.t01 Wine grape plastid 49.02 50.06
Solyc01g006560.2.1 Tomato plastid 47.83 48.89
Os02t0194700-01 Rice plasma membrane 48.7 48.49
VIT_06s0004g01510.t01 Wine grape plastid 47.07 48.17
KRG89883 Soybean cytosol, plastid 44.79 48.08
KRH24671 Soybean cytosol, plastid 47.29 47.7
KRH29668 Soybean nucleus 46.85 47.68
Os03t0700400-00 Rice cytosol, plasma membrane 6.51 47.62
Solyc01g006540.2.1 Tomato plastid 46.1 47.43
VIT_06s0004g01450.t01 Wine grape cytosol, extracellular 44.14 47.38
VIT_06s0004g01470.t01 Wine grape cytosol 46.31 47.29
KRH29669 Soybean plastid 46.2 47.28
PGSC0003DMT400081909 Potato plastid 46.1 47.27
CDY04196 Canola plastid 45.55 47.24
KRH17965 Soybean plastid 46.85 47.06
AT3G45140.1 Thale cress plastid 45.55 46.88
CDX79416 Canola plastid 45.77 46.68
CDX91565 Canola plastid 45.55 46.67
KRG89889 Soybean cytosol, plastid 43.49 46.63
CDX67920 Canola plastid 45.55 46.46
Bra003526.1-P Field mustard plastid 45.44 46.35
CDY61036 Canola plastid 44.58 46.23
Os08t0508800-01 Rice nucleus, plasma membrane 46.31 46.21
Solyc12g011040.1.1 Tomato nucleus, plastid 44.69 46.19
Bra004060.1-P Field mustard plastid 45.01 46.16
Bra004057.1-P Field mustard cytosol 44.58 46.13
CDY16339 Canola plastid 37.96 45.99
KRG89888 Soybean nucleus 44.79 45.74
KRH18682 Soybean cytosol, mitochondrion 45.01 45.55
Bra004059.1-P Field mustard plastid 42.62 45.38
Os08t0509100-01 Rice nucleus 46.1 45.16
CDY70843 Canola cytosol 6.07 44.44
Os04t0447100-01 Rice cytosol 38.07 44.1
Bra022535.1-P Field mustard plastid 38.61 43.9
CDY61880 Canola plastid 23.97 40.11
Os03t0179900-01 Rice plastid 39.91 40.09
Os03t0699700-01 Rice cytosol, plastid 36.98 39.51
Bra004058.1-P Field mustard plastid 44.69 38.94
Os05t0304600-01 Rice plastid 35.25 38.37
CDY07407 Canola cytosol, plastid 45.23 38.01
Os03t0738600-01 Rice plasma membrane, plastid 35.68 37.82
Os11t0575600-01 Rice mitochondrion 35.14 37.33
Os03t0700700-01 Rice cytosol, plasma membrane, plastid 35.36 37.17
CDY70245 Canola plastid 16.59 33.41
CDY07408 Canola plastid 16.16 32.53
CDY70606 Canola plastid 13.12 30.63
CDY61882 Canola plastid 11.82 28.17
Protein Annotations
Gene3D:1.20.245.10MapMan:11.7.1.2Gene3D:2.60.60.20Gene3D:3.10.450.60Gene3D:4.10.372.10Gene3D:4.10.375.10
EntrezGene:4352505ProteinID:ABA98917.2ProteinID:BAF30030.1ProteinID:BAT17627.1GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0006629GO:GO:0006633GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009507
GO:GO:0009536GO:GO:0009987GO:GO:0010628GO:GO:0016165GO:GO:0016491GO:GO:0016702
GO:GO:0031408GO:GO:0046872GO:GO:0051213GO:GO:0055114InterPro:IPR001024InterPro:IPR013819
InterPro:IPR027433InterPro:LipOaseInterPro:LipOase_CInterPro:LipOase_CSInterPro:LipOase_C_sfInterPro:LipOase_Fe_BS
InterPro:LipOase_plantInterPro:Lipoxygenase_dom_3EnsemblPlantsGene:Os12g0559200EnsemblPlants:Os12t0559200-01PFAM:PF00305InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sfPRINTS:PR00087PRINTS:PR00468ScanProsite:PS00081ScanProsite:PS00711PFscan:PS51393
PANTHER:PTHR11771PANTHER:PTHR11771:SF89UniProt:Q2QNN5SMART:SM00308SUPFAM:SSF48484SUPFAM:SSF49723
UniParc:UPI0000047565RefSeq:XP_015620637.1SEG:seg:::
Description
LIPOXYGENASE 11Lipoxygenase (EC 1.13.11.12). (Os12t0559200-01);Similar to Lipoxygenase. (Os12t0559200-02)
Coordinates
chr12:-:22854749..22860198
Molecular Weight (calculated)
104693.0 Da
IEP (calculated)
6.224
GRAVY (calculated)
-0.494
Length
922 amino acids
Sequence
(BLAST)
001: MLTATQTLAP AVLSRSHGAP SSFSSQPRRT AAAASRVSCT RVGALSEVVN GELVVGDQEQ TTDDLLTRHK NVVADYTLSA TVTVSLKQDD STPQKVADMV
101: NRDWLFLDFF SSHIEGMHTE PQLARYSHMD GKGSFIYEAS FSIPSSLDAV GAVQVVNRYS SEVYISDIDV HLCGGRHQWT DITFHCNSWI DYNPNDQRFF
201: FPLKSYLPSQ TPRGVKNLRK EELRAIRGDG RGERKEWERI YDYDVYNDLG DPDNDPATRR PVLGGRGRPY PRRCRTGRRR CRTDPSSESP PAKDGAGIYV
301: PRDEAFTERK AGAFATKKAL SALSAFTTAQ RVSGDRRRGF PSLAAIDALY EDGYKNRPSS SQQEADNLEG YFREVLQKQV KLLLKGEKEE FKEELRKVFK
401: FQTPEIHDKD KLAWFRDEEF ARQTLAGMNP LSIQLVRDTD FPIFSKLDEE TYGPGDSLIT KELIEEQING VMTAEEAVEK KKLFMLDYHD VLLPFVHAVR
501: ELDDTTLYAS RTLFFLTEDG TLRPIAIELT RPKSPNTPQW RQVFTPGSSV AASWLWQLAK THVLAHDTGY HQLVSHWLRT HCCVEPYVIA ANRRLSQMHP
601: IYRLLHPHFR FTMEINAQAR GMLINANGII ESAFAPGKLC MELSSAVYDK FWRFDMEALP ADLIRRGMAI ECEDGKLELT IEDYPYANDG LLIWDSIKEW
701: VSDYVNHYYQ LASDIHMDKE LQGWWNEVRT KGHPDKEEGW PELNCHGSLV EVLTTIIWVA SGHHAAVNFG QYPYAGYFPN RPTIARRNMP TEGQACSHDG
801: MQPTFVEDPV RVLLDTFPSQ YQTTLVLPVL NLLSSHSPGE EYMGTHAESA WMADREVRAA FGRFNERMMS IAEMIDCRNK DPERKNRQGP GVVPYVLLKP
901: SYGDPKDMTS VMEMGIPNSI SI
Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)
001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI
Arabidopsis Description
LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.