Factsheet for Os03t0700700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G275900.1	Wheat	cytosol, unclear	79.7	79.61
TraesCS4B01G037800.1	Wheat	cytosol	79.7	79.61
TraesCS4D01G035100.1	Wheat	cytosol	79.48	79.39
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	79.48	79.39
EER93611	Sorghum	cytosol	79.93	78.94
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	79.59	78.69
Zm00001d033624_P001	Maize	cytosol	79.36	78.47
KXG37783	Sorghum	cytosol	75.71	74.36
Os03t0700400-00	Rice	cytosol, plasma membrane	10.6	73.81
TraesCS3B01G602500.1	Wheat	cytosol	73.32	72.99
TraesCS3B01G605700.1	Wheat	cytosol	72.18	71.53
GSMUA_Achr1P22970_001	Banana	cytosol	65.91	68.32
KRH35534	Soybean	cytosol	34.78	68.08
Os03t0738600-01	Rice	plasma membrane, plastid	67.16	67.7
Os03t0699700-01	Rice	cytosol, plastid	66.59	67.67
CDY70916	Canola	cytosol	37.86	65.87
PGSC0003DMT400063654	Potato	cytosol	36.37	64.97
VIT_14s0128g00780.t01	Wine grape	cytosol	62.94	64.26
VIT_14s0128g00790.t01	Wine grape	cytosol	62.49	63.06
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	60.09	61.14
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	59.98	61.09
Bra021322.1-P	Field mustard	cytosol	59.52	60.91
KRH68548	Soybean	cytosol	59.52	60.84
PGSC0003DMT400081370	Potato	cytosol	60.78	60.78
PGSC0003DMT400028158	Potato	cytosol	59.64	60.67
AT1G55020.1	Thale cress	cytosol	59.06	60.3
VIT_06s0004g01580.t01	Wine grape	cytosol	23.03	60.3
Solyc09g075860.2.1	Tomato	cytosol, nucleus	60.21	60.21
PGSC0003DMT400063446	Potato	cytosol	55.07	60.07
KRG91271	Soybean	cytosol	58.49	59.79
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	58.61	59.77
PGSC0003DMT400054145	Potato	cytosol	58.15	59.44
KRH62399	Soybean	cytosol, endoplasmic reticulum	15.96	59.32
KRH16725	Soybean	cytosol	15.62	59.31
KRH33939	Soybean	cytosol, endoplasmic reticulum	58.49	59.31
Solyc01g099180.2.1	Tomato	cytosol	57.7	59.25
Solyc01g099200.2.1	Tomato	cytosol, plastid	56.78	59.22
VIT_05s0020g03170.t01	Wine grape	cytosol	58.84	58.9
PGSC0003DMT400063469	Potato	cytosol	56.33	58.6
Solyc09g075870.1.1	Tomato	cytosol	56.67	58.2
PGSC0003DMT400063461	Potato	cytosol	45.95	58.07
Bra039948.1-P	Field mustard	cytosol	58.61	57.95
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	56.67	57.93
AT3G22400.1	Thale cress	cytosol	58.38	57.79
PGSC0003DMT400063477	Potato	cytosol	56.33	57.71
PGSC0003DMT400063452	Potato	cytosol	52.45	57.57
CDY38326	Canola	cytosol	58.15	57.5
Solyc01g099210.2.1	Tomato	cytosol	56.56	57.47
CDY46325	Canola	cytosol	57.58	57.26
KRH10050	Soybean	endoplasmic reticulum	55.87	57.18
KRH23265	Soybean	endoplasmic reticulum, nucleus	56.21	56.93
KRH23266	Soybean	cytosol	53.36	56.66
KRH44090	Soybean	endoplasmic reticulum	55.3	56.4
KRH62403	Soybean	cytosol, endoplasmic reticulum	14.6	56.39
KRH44093	Soybean	endoplasmic reticulum	54.39	56.38
Bra023829.1-P	Field mustard	cytosol	58.04	56.37
KRH57987	Soybean	cytosol	16.53	56.2
KRH47522	Soybean	endoplasmic reticulum, nucleus	55.3	56.07
CDY64191	Canola	cytosol	57.81	55.9
KRH44094	Soybean	endoplasmic reticulum	54.85	55.48
KRH23268	Soybean	endoplasmic reticulum	53.82	55.33
KRH10053	Soybean	endoplasmic reticulum	53.82	55.33
KRH10051	Soybean	endoplasmic reticulum, nucleus	53.93	55.26
KRH44095	Soybean	endoplasmic reticulum	54.39	55.08
KRH44097	Soybean	cytosol, endoplasmic reticulum	54.5	55.07
Os11t0575600-01	Rice	mitochondrion	54.5	55.07
KRH47525	Soybean	endoplasmic reticulum	54.28	54.84
KRH47067	Soybean	endoplasmic reticulum	53.71	54.51
KRH47066	Soybean	endoplasmic reticulum, nucleus	53.36	54.48
KRH23269	Soybean	endoplasmic reticulum	50.74	54.14
KRH47069	Soybean	endoplasmic reticulum	27.25	52.53
KRG88464	Soybean	cytosol	26.91	51.75
KRH13357	Soybean	endoplasmic reticulum	14.14	51.24
KRH47064	Soybean	endoplasmic reticulum	33.18	51.05
KRH44092	Soybean	nucleus	49.14	50.29
Os12t0559934-00	Rice	cytosol	10.72	48.21
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	27.48	47.16
Os05t0304600-01	Rice	plastid	45.38	46.99
Solyc01g099150.2.1	Tomato	nucleus	44.58	45.36
CDY43490	Canola	cytosol, plasma membrane	59.52	43.39
Os04t0447100-01	Rice	cytosol	39.22	43.22
Os03t0179900-01	Rice	plastid	40.82	39.0
Os08t0509100-01	Rice	nucleus	41.28	38.47
Os08t0508800-01	Rice	nucleus, plasma membrane	40.48	38.42
Os02t0194700-01	Rice	plasma membrane	39.0	36.93
Os12t0559200-01	Rice	plastid	37.17	35.36
Os12t0560200-00	Rice	cytosol	3.76	33.33

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	EntrezGene:4333823
MapMan:50.1.12	ProteinID:AAX95641.1	ProteinID:ABF98392.1	EMBL:AK072689	ProteinID:BAS85919.1	ProteinID:BAS85921.1
ProteinID:EAZ28269.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629
GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	EnsemblPlantsGene:Os03g0700700	EnsemblPlants:Os03t0700700-01
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF49
UniProt:Q53RB0	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI00000AB080	RefSeq:XP_015632132.1

Description

LIPOXYGENASE 1Similar to Lipoxygenase (Fragment). (Os03t0700700-01);Similar to Lipoxygenase. (Os03t0700700-02);Similar to Lipoxygenase. (Os03t0700700-03);Similar to Lipoxygenase. (Os03t0700700-04)

Coordinates

chr3:+:28106903..28113286

Molecular Weight (calculated)

98703.3 Da

IEP (calculated)

7.342

GRAVY (calculated)

-0.323

Length

877 amino acids

Sequence
(BLAST)

001: MQVQGFFDRL TGRNKEAWKE GRIRGTAVLV KKDVLGLGDF HASLLDGVHN ILGHKEGVAF RLVSATARDP SNGGRGKLGK PAHLEELVVT MKSTAAGESV
101: FRVAFEWDES QGIPGAVVVT NSNRSEFFLK TLTLDGVPGK GTVVFVANSW IYPADNYQYE RVFFANDTYL PSKMPAPLIP YRQEELNILR GDGKIGPYKE
201: HDRIYRYDYY NDLGQPDKGS KLVRPVLGGS QELPYPRRGR TGRAPTKTDP NTESRLPLLD LNIYVPRDER FGHLKMSDFL GYSLKAIVEG VLPIIRTYVD
301: TTPKEFDSFQ DIMELYEGGL KVANASALAE IKKRVPFELI KSLLPVAGDQ VLKLPLPHVI KEDKFAWRTD EEFAREMLAG VNPVMIKRLT NFPAKSTLDP
401: NVYGDHTSKI TEAHIKHNME GLTVQNALKG NRLFILDHHD HFMPFLDKIN KLDGNFIYAS RTILLLKDDG TLKPLAIELS LPHPDGQQHG AVSKVYTPAN
501: TGVESQIWQL AKAYASVNDS AWHQLISHWL NTHAVIEPFV IATNRQLSVV HPVHKLLSPH YRDTMNINAL ARQTLINADG IFEKTVFPGK YALEMSSVVY
601: KNWKFTEQAL PVDLVKRGVA VPDPTSPYNV RLLIKDYPYA VDGLVIWWAI ERWVGEYLAI YYPNDGVLRG DEELQAWWKE VREVGHGDLK DQDWWPKMDT
701: VQELTRACTI IIWIASALHA AVNFGQYPYA GFLPNRPTVS RRPMPEPGTE EYAKLERGGD EADLVFIHTI TSQFQTILGI SLIEILSKHS SDEVYLGQRD
801: TPEWTSDAKA LDAFKRFGSR LVDIENRIKD MNGNSALKNR NGPVKMPYML LYPNTSDVTK EKGQGLTAMG IPNSISI

Best Arabidopsis Sequence Match ( AT3G22400.1 )
(BLAST)

001: MIHTDIAEIL CVKPKTTKKT KTMEEDVKKT TTMKIEGEVV VMKKNLLDFK DVMASLLDRV NELLGRRVSL HLISSHQPDP ANEKRGRLGK AAHLEKWVTK
101: IKTSVTAEET AFGVTFDWDE SMGPPAAFVI KNHHHSQFYL KSLTLRGFPD GEGGATAIHF ICNSWIYPNH RYRSDRVFFS NKAYLPSETP ELIKELREEE
201: LKNLRGNEKG GEFKEWDRVY DYAYYNDLGA PDKGPDSVRP VLGGSPELPY PRRGKTGRKS TKSDPKSESR LALLNLNIYV PRDERFSHVK FSDFLAYALK
301: SVTQVLVPEI ASVCDKTINE FDSFEDVFHL YDGSIKLANG HTISKLRDVI PWEMFRELVR NDGERFLKYP LPDILKESRS AWRTDEEFAR EMLAGLNPVV
401: ISRLQEFPPK SCLDSAKYGN QHSSIRTEHI ESNMNGLNVQ EALEQNKLYI LDHHDALMPY LTRINSTNTK TYATRTLLLL QADGTLKPLA IELSLPHAQG
501: ESYGSVSKVF TPAEKGVEGS VWQLAKAYAA VNDSGYHQLI SHWLQTHAVI EPFIIASNRQ LSVVHPIHKL LHPHFRDTMN INALARHVLI NSDGVLERTV
601: FPSRYAMEMS SSIYKNWVFT EQALPKDLLK RGVAVEDPNS DNGVKLLIED YPFAVDGLEI WSAIKTWVTE YCTFYYNNDK TVQTDTEIQS WWTELRTKGH
701: GDKRHESWWP SMQTRDDLIE TCTIIIWIAS ALHAAVNFGQ YPYAGFLPNR PTVSRRFMPE PGTDEYAELE EDADVAFLKT ITPQLQTLLG ISIIEILSMH
801: STDEIYLGQR DSPNWTADDE PLEAFKRFGK ELELIENNII RRNNDKRFKN RTGPVNIPYT LLYPNTTDYT REGGITGKGI PNSVSI

Arabidopsis Description

LOX5Linoleate 9S-lipoxygenase 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.