Factsheet for Os08t0509100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 15276429

msms PMID: 15276429 doi

MM Khan, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba 305-8602, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0262400-01
Os10t0467600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	Os03t0262400-01	AT5G18110.1	11117257
AT3G45140.1	Os10t0467600-01	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0508800-01	Rice	nucleus, plasma membrane	88.31	89.94
OQU80925	Sorghum	cytosol	71.63	77.92
HORVU7Hr1G050680.1	Barley	peroxisome	55.26	76.02
TraesCS7A01G246200.1	Wheat	plastid	75.03	75.83
TraesCS7B01G145200.1	Wheat	plastid	74.07	75.11
TraesCS7D01G244800.1	Wheat	plastid	74.39	75.11
TraesCS4D01G347300.1	Wheat	cytosol	68.12	72.43
Zm00001d031449_P001	Maize	mitochondrion	73.33	72.18
Os12t0559934-00	Rice	cytosol	14.35	69.23
VIT_13s0064g01500.t01	Wine grape	cytosol	17.0	64.0
VIT_13s0064g01490.t01	Wine grape	cytosol	26.46	62.41
GSMUA_Achr9P12470_001	Banana	plastid	55.26	61.68
Solyc01g009680.2.1	Tomato	plastid	28.8	61.17
VIT_06s0004g01500.t01	Wine grape	cytosol	51.33	61.06
CDY61034	Canola	cytosol	28.8	60.63
CDY07409	Canola	cytosol	24.87	60.47
VIT_06s0004g01480.t01	Wine grape	cytosol	50.37	59.77
CDY72550	Canola	cytosol	20.3	59.5
VIT_06s0004g01460.t01	Wine grape	plastid	36.34	57.19
VIT_13s0064g01480.t01	Wine grape	plastid	54.3	56.59
PGSC0003DMT400020118	Potato	cytosol	41.66	56.57
VIT_06s0004g01470.t01	Wine grape	cytosol	53.45	55.7
CDY61881	Canola	cytosol	20.83	55.21
KRH29668	Soybean	nucleus	52.82	54.86
KRG89889	Soybean	cytosol, plastid	50.05	54.77
VIT_06s0004g01510.t01	Wine grape	plastid	52.07	54.38
KRG89883	Soybean	cytosol, plastid	49.63	54.37
KRH29669	Soybean	plastid	51.97	54.27
KRH24671	Soybean	cytosol, plastid	52.07	53.61
Solyc01g006540.2.1	Tomato	plastid	50.58	53.12
PGSC0003DMT400081909	Potato	plastid	50.69	53.06
Solyc01g006560.2.1	Tomato	plastid	50.8	52.99
KRH17965	Soybean	plastid	51.22	52.51
CDY04196	Canola	plastid	49.52	52.42
KRG89888	Soybean	nucleus	50.16	52.27
CDX91565	Canola	plastid	49.84	52.11
KRH18682	Soybean	cytosol, mitochondrion	50.05	51.7
CDY16339	Canola	plastid	41.76	51.64
Os03t0700400-00	Rice	cytosol, plasma membrane	6.91	51.59
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	47.08	51.57
Bra004059.1-P	Field mustard	plastid	47.29	51.39
Bra004057.1-P	Field mustard	cytosol	48.35	51.07
CDX67920	Canola	plastid	48.88	50.88
Bra003526.1-P	Field mustard	plastid	48.78	50.77
CDY61036	Canola	plastid	47.93	50.73
Bra004060.1-P	Field mustard	plastid	48.46	50.72
AT3G45140.1	Thale cress	plastid	48.25	50.67
CDX79416	Canola	plastid	48.57	50.55
Bra022535.1-P	Field mustard	plastid	43.25	50.19
CDY70843	Canola	cytosol	6.7	50.0
Os02t0194700-01	Rice	plasma membrane	49.2	50.0
Solyc12g011040.1.1	Tomato	nucleus, plastid	47.29	49.89
Os04t0447100-01	Rice	cytosol	40.17	47.49
CDY61880	Canola	plastid	27.1	46.28
Os12t0559200-01	Rice	plastid	45.16	46.1
Bra004058.1-P	Field mustard	plastid	48.35	43.01
Os03t0179900-01	Rice	plastid	41.34	42.37
CDY70245	Canola	plastid	20.62	42.36
CDY70606	Canola	plastid	17.64	42.03
CDY07407	Canola	cytosol, plastid	48.99	42.02
CDY07408	Canola	plastid	20.4	41.92
CDY61882	Canola	plastid	17.0	41.34
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	38.47	41.28
Os03t0738600-01	Rice	plasma membrane, plastid	37.62	40.69
Os03t0699700-01	Rice	cytosol, plastid	37.3	40.67
Os05t0304600-01	Rice	plastid	36.56	40.61
Os11t0575600-01	Rice	mitochondrion	35.71	38.71
Os12t0560200-00	Rice	cytosol	4.04	38.38

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
EntrezGene:4345994	EMBL:AF095896	EMBL:AK066825	ProteinID:BAC57390.1	ProteinID:BAD10668.1	ProteinID:BAD10669.1
ProteinID:BAD10729.1	ProteinID:BAF24114.1	ProteinID:BAT06179.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016165	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	EnsemblPlantsGene:Os08g0509100	EnsemblPlants:Os08t0509100-01	PFAM:PF00305	PFAM:PF01477
InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711
PFscan:PS50095	PFscan:PS51257	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF66	UniProt:Q84YK8
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI00000047EA	RefSeq:XP_015650450.1	SEG:seg

Description

LIPOXYGENASE 8Similar to Lipoxygenase, chloroplast precursor (EC 1.13.11.12). (Os08t0509100-01);Similar to Lipoxygenase. (Os08t0509100-02)

Coordinates

chr8:+:25241037..25250038

Molecular Weight (calculated)

104500.0 Da

IEP (calculated)

7.006

GRAVY (calculated)

-0.349

Length

941 amino acids

Sequence
(BLAST)

001: MLRPQLNPSS SHHHTTTTSS SSSTQLYFAS SSCIASLRRP SPPSLIAGAG CRTTRRRQQG RQRVVVRCAS SSAASSASEA ARRGTGSSDM APAAVVKVKA
101: VATIKVTVEG LLNSLRPSKA IDNIRDLIGR SLFLELVSSE LEAKTGKKKA TVHSYAHKVD DDDHGVVTYE ADFDVPTGFG PIGAVVVTNE LGQEMFLEDL
201: NLTAGDGAGN STVLPIRCNS WVQPKSSIDE GTPGKRIFFA KAYLPGQTPA GLRSYREEDL KQKRGNGAGQ READDRVYDY DVYNDLGNPD SNGDLARPVL
301: GGSKQFPYPR RCRTGRPPSK KDPKSETRKG NVYVPRDEEF SEVKNAQFLL KTLQSVLHAA VPAAQSALID NLSLNLPFPS FFVIDKLFED GVELPGVEKL
401: GFLHSIVPRL LELLRDSPGD KILLFDTPAN VQKDKFAWLR DEEFARETLA GINPYAIELV REFPLKSKLD PAVYGPAESA ITADLLEEQM RRVMTVEEAI
501: SQKRLFMLDF HDLFLPYVHK IRSLKHTTMY GSRTIFFLTD DGTLRLLAIE LTRPASPSQP QWRQVFTPST DTTKSWLWRM AKAHVRAHDA GHHELITHWL
601: RTHCAVEPYI IAANRQLSEM HPIYQLLHPH FRYTMRINAL ARSRLISAAG IIELSFSPQK YSMELSSVAY DKLWRFDMEA LPADLVRRGM AEEDPTAEHG
701: LRLAIEDYPF ANDGLLIWDA IKTWVQAYVA RFYPDADSVA GDEELQAFWT EVRTKGHGDK KDAPWWPKLD SPESLAHTLT TIVWVAAAHH AAVNFGQYDF
801: GGYFPNRPSI ARTVMPVEEP VDGAAMERFL DNPDQALREC FPSQVQATVV MAVLDVLSTH STDEEYLGGE QTRPWNSDAA VQAAYAGFTA RLKEIEGVID
901: GRNKDRKLKN RCGAGILPYQ LMKPFSDAGV TGMGIPNSTS I

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.