CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92511
EER94108

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	EER92511	AT5G18110.1	11117257
AT3G45140.1	EER94108	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031449_P001	Maize	mitochondrion	92.02	83.26
HORVU7Hr1G050680.1	Barley	peroxisome	59.08	74.71
TraesCS7A01G246200.1	Wheat	plastid	79.54	73.9
TraesCS7B01G145200.1	Wheat	plastid	79.19	73.81
TraesCS4D01G347300.1	Wheat	cytosol	75.38	73.67
TraesCS7D01G244800.1	Wheat	plastid	79.19	73.5
Os08t0509100-01	Rice	nucleus	77.92	71.63
Os08t0508800-01	Rice	nucleus, plasma membrane	75.72	70.89
VIT_13s0064g01500.t01	Wine grape	cytosol	18.61	64.4
VIT_13s0064g01490.t01	Wine grape	cytosol	28.9	62.66
CDY61034	Canola	cytosol	31.79	61.52
GSMUA_Achr9P12470_001	Banana	plastid	59.65	61.21
Solyc01g009680.2.1	Tomato	plastid	31.33	61.17
CDY72550	Canola	cytosol	22.66	61.06
CDY07409	Canola	cytosol	27.05	60.47
VIT_06s0004g01500.t01	Wine grape	cytosol	54.68	59.8
VIT_06s0004g01480.t01	Wine grape	cytosol	53.76	58.64
PGSC0003DMT400020118	Potato	cytosol	46.01	57.43
VIT_06s0004g01460.t01	Wine grape	plastid	39.31	56.86
VIT_13s0064g01480.t01	Wine grape	plastid	58.27	55.81
CDY61881	Canola	cytosol	22.66	55.21
VIT_06s0004g01510.t01	Wine grape	plastid	57.34	55.05
KRG89889	Soybean	cytosol, plastid	54.68	55.0
CDY70843	Canola	cytosol	7.98	54.76
KRG89883	Soybean	cytosol, plastid	53.99	54.37
KRH29668	Soybean	nucleus	56.76	54.19
KRH24671	Soybean	cytosol, plastid	57.23	54.16
VIT_06s0004g01470.t01	Wine grape	cytosol	56.19	53.82
KRH29669	Soybean	plastid	55.95	53.72
PGSC0003DMT400081909	Potato	plastid	55.14	53.06
Solyc01g006540.2.1	Tomato	plastid	54.45	52.57
KXG29701	Sorghum	plastid	55.72	52.56
Solyc01g006560.2.1	Tomato	plastid	54.8	52.55
KRH17965	Soybean	plastid	55.26	52.07
KRG89888	Soybean	nucleus	54.1	51.83
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	51.45	51.8
KRH18682	Soybean	cytosol, mitochondrion	54.34	51.59
Solyc12g011040.1.1	Tomato	nucleus, plastid	52.49	50.9
CDY04196	Canola	plastid	52.02	50.62
CDX91565	Canola	plastid	51.91	49.89
CDX79416	Canola	plastid	52.02	49.78
CDX67920	Canola	plastid	51.91	49.67
Bra004059.1-P	Field mustard	plastid	49.71	49.65
Bra003526.1-P	Field mustard	plastid	51.79	49.56
AT3G45140.1	Thale cress	plastid	51.33	49.55
Bra004060.1-P	Field mustard	plastid	51.45	49.5
Bra004057.1-P	Field mustard	cytosol	50.98	49.49
CDY61036	Canola	plastid	50.64	49.27
CDY16339	Canola	plastid	42.43	48.23
Bra022535.1-P	Field mustard	plastid	44.86	47.84
CDY61880	Canola	plastid	27.63	43.38
EER95400	Sorghum	mitochondrion	45.78	42.86
EES10882	Sorghum	plastid	45.43	42.53
Bra004058.1-P	Field mustard	plastid	51.68	42.25
EER93612	Sorghum	cytosol	41.85	41.8
EES04025	Sorghum	cytosol	41.04	40.9
CDY07407	Canola	cytosol, plastid	51.79	40.84
EES04028	Sorghum	cytosol	41.16	40.78
KXG24148	Sorghum	cytosol	40.0	40.37
EER93611	Sorghum	cytosol	41.27	40.2
CDY07408	Canola	plastid	21.04	39.74
KXG37783	Sorghum	cytosol	40.92	39.64
CDY70245	Canola	plastid	20.58	38.86
KXG23911	Sorghum	cytosol, plastid	24.16	38.35
CDY70606	Canola	plastid	16.88	36.96
CDY61882	Canola	plastid	15.95	35.66
KXG27309	Sorghum	mitochondrion, plastid	36.07	34.4

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
UniProt:A0A1Z5RBV5	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024
InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	EnsemblPlants:OQU80925	ProteinID:OQU80925	ProteinID:OQU80925.1
PFAM:PF00305	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF66	SMART:SM00308
EnsemblPlantsGene:SORBI_3007G210400	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000B423B58	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:63894436..63911575

Molecular Weight (calculated)

95547.8 Da

IEP (calculated)

6.120

GRAVY (calculated)

-0.321

Length

865 amino acids

Sequence
(BLAST)

001: MAAASVRVTA VATIKVTVGG FLNSLRPSRA IDDVKDLIGR SLYLELVSSQ LDAKTGQEKP RLQSYAHKVA DNDAGVVTYE ADFDVPPGFG EVGAVLVTNE
101: HHTEMFLEDV NLYSSSASAG SNSDSDSDDG DDGARAAPLL AIRCKSWVAP KSADAKGNRK RVFFANKPYL PGQTPAGLRS YRNKDLEQKR GDGRGERKST
201: DRIYDYDTYN DLGDPDSDAG KKARPVLGGS AQFPYPRRCR TGRPMSATDP KTETRSSDNY VPRDEAFSEV KNLQFSVTTL RSVLHAAVPA VQSTLTDPNR
301: GFPSFFVIDK LFEDGVELPK AEQLGFLHSV VPRLLQILRD GPGDHVLLFD TPANVQKDKF AWLRDEEFAR ETLAGMNPYA IELVTEFPLK SKLDPAVYGP
401: AESAITAEVL ERQMGRVMTV AEAVSQKRLF MLDYHDLFLP YVHKIRAQAN TTMYGSRTVF FLCDDGTLRL LAIELTRPAS PTLPQWRRVF TSSTDTTESW
501: LWRMAKSHVR AHDSGHHELV SHWLRTHCAV EPYIIAANRQ LSEMHPVYQL LHPHFRYTMR INALARSALI NAGGIIELSF SPQRYAMELS SVAYDKLWRF
601: DTEALPADLV RRGMAVEDPN AEHGVRLTVP DYPFANDGLL VWDAIKGWVT AYVARFYPDA GTIAGDAELQ AFWTDVRTVG HGDKKDAPGW PALDSPASLA
701: HTLTTIIWVA SAHHAAVNFG QYDFAGYFPN RPSIARTNMP VEEPVDAAAL AAFLDNPDQA LRECFPSQVQ ATLVMAVLDL LSTHSPDEEY LGGMETAPWN
801: DDATVQAAYG KFNARLKEIE GIIDGRNKDP SLKNRCGAGI VPYQLMKPFS QPGVTGMGIP NSTSI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.