CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002000_P003	Maize	cytosol, mitochondrion, plastid	86.88	87.17
TraesCS2D01G528400.1	Wheat	cytosol, mitochondrion	63.29	62.94
HORVU2Hr1G115980.2	Barley	plastid	60.97	62.7
TraesCS2D01G528500.1	Wheat	mitochondrion, plastid	61.52	60.19
HORVU2Hr1G115960.1	Barley	plastid	61.08	59.89
TraesCS2A01G525500.1	Wheat	plastid	61.19	59.87
TraesCS2B01G555400.2	Wheat	mitochondrion, plastid	61.08	59.76
KXG37783	Sorghum	cytosol	41.46	42.11
EES04025	Sorghum	cytosol	40.24	42.05
EER93612	Sorghum	cytosol	39.58	41.45
EES04028	Sorghum	cytosol	39.8	41.35
EER93611	Sorghum	cytosol	40.46	41.33
KXG24148	Sorghum	cytosol	36.16	38.27
OQU80925	Sorghum	cytosol	34.4	36.07
KXG23911	Sorghum	cytosol, plastid	21.39	35.6
EES10882	Sorghum	plastid	36.16	35.5
EER95400	Sorghum	mitochondrion	36.05	35.39
KXG29701	Sorghum	plastid	35.39	35.01
KRH30640	Soybean	cytosol	5.84	28.34

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.375.10	MapMan:50.1.12	UniProt:A0A1B6PNR0
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
EnsemblPlants:KXG27309	ProteinID:KXG27309	ProteinID:KXG27309.1	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_plant	PFAM:PF00305	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087
PRINTS:PR00468	ScanProsite:PS00081	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF91	SMART:SM00308
EnsemblPlantsGene:SORBI_3006G248300	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI00081AB47C	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:58764200..58767760

Molecular Weight (calculated)

99458.4 Da

IEP (calculated)

5.400

GRAVY (calculated)

-0.326

Length

907 amino acids

Sequence
(BLAST)

001: MMQQLRRSQP SPCHLRGSRF TGAGLPARPM LALGAAAARR SRPETVQLSA CHAAAASAQP RPRAVADSAL GASSTSVQVR GKLLLQNFFA DDGSDSQRQL
101: RLSIQLVSAT VAGPDGRGVK AEASVLDAVV GSGDTELDVD LTWDEALGAP GAVVVKNHSD FPVYLRLLSM PTRVLGADDK AATTAAVHFA CNGWVYPVDK
201: HPYRLFFTND ACVKEETPSS LLKYREDELA VLRGDGETAD RPFQPWDRVY DYALYNDLGN PDLRRDLARP VLGGSREYPY PRRTKTGRPA AKTGPCPYPQ
301: SESRAPLDEE IYVPCDERVG FGSVPAPTLP PLGGHFSSLA DVYRLFGLDD VGRLPEAKGV INSGAPFPVV PQVISVNPTH WRKDEEFARQ MIAGANPVCI
401: KRVTKFPLTS ELDRGVFGDQ DSKITEDHVE KNMGGMTLQQ AVEEGRLYVV DHHDWVMPYL KRINELPGEE EKAEVSQRKV YAARTLLFLN REDSTLKPLA
501: IELSSPHPEK EQLGAVSTVY TPPDSRDDDD DGITAGRFSV WELAKAHAAA NDTVENNFVT HWLNTHASME PIVIAANRQL SVLHPIHRLL KPHFRKTLHI
601: NAVARQIVVG SGDQRKDGSV FRGIHEVTYF PSRYNMEMSS MAYRAWNFTG LALPNDLINR GVAKGDAKKP ETLELVIKDD YPYAADGLEM WAAIKDWVAD
701: YCAIYYGDDG AVARDSELQG WWSEVRNVGH GDLSDAPWWP AMDCLADLVE TCTTIVWLGS AYHAAISFGQ YDYQGFIPNG PSLTTRPVPD PEVTVTVAES
801: DFLESVTPVA EALGFMSISS GPLGLVGTEV YLGQRPDTEQ WTSERSAAEA LAVFRARLEE VAGNIERRNA DPALKNRTGP VEVPYTLLKP TAQPGPVLRG
901: IPNSITV

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.