Factsheet for TraesCS2A01G525500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G528500.1	Wheat	mitochondrion, plastid	93.85	93.85
TraesCS2B01G555400.2	Wheat	mitochondrion, plastid	92.88	92.88
HORVU2Hr1G115960.1	Barley	plastid	88.46	88.65
HORVU2Hr1G115980.2	Barley	plastid	83.5	87.76
KXG27309	Sorghum	mitochondrion, plastid	59.87	61.19
Zm00001d002000_P003	Maize	cytosol, mitochondrion, plastid	59.33	60.84
TraesCS4A01G359800.1	Wheat	cytosol	27.29	47.65
TraesCS4A01G275800.1	Wheat	cytosol	11.22	43.51
TraesCS5A01G378800.2	Wheat	cytosol	36.14	43.06
TraesCS5A01G378700.1	Wheat	cytosol	38.08	40.86
TraesCS4A01G275900.1	Wheat	cytosol, unclear	38.62	40.77
TraesCS5A01G378900.1	Wheat	cytosol	37.86	40.62
TraesCS6A01G132500.1	Wheat	mitochondrion	37.76	40.09
TraesCS6A01G132200.1	Wheat	mitochondrion	37.76	40.09
TraesCS5A01G379000.1	Wheat	nucleus, unclear	31.72	38.18
TraesCS1A01G212900.1	Wheat	cytosol	34.74	38.15
TraesCS7A01G034900.1	Wheat	mitochondrion	11.33	35.84
TraesCS4A01G009400.1	Wheat	plastid	34.95	35.1
TraesCS6A01G166000.1	Wheat	golgi	34.09	35.07
TraesCS2A01G315100.2	Wheat	plastid	35.06	34.57
TraesCS5A01G007900.1	Wheat	plastid	33.23	33.19
TraesCS7A01G246200.1	Wheat	plastid	33.12	32.98
KRH30640	Soybean	cytosol	6.15	30.48
TraesCS5A01G032800.1	Wheat	mitochondrion	26.32	28.41

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.375.10	MapMan:50.1.12	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:LipOase
InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_plant	PFAM:PF00305	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF91	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS2A01G525500	EnsemblPlants:TraesCS2A01G525500.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:745667134..745671062

Molecular Weight (calculated)

101423.0 Da

IEP (calculated)

6.226

GRAVY (calculated)

-0.387

Length

927 amino acids

Sequence
(BLAST)

001: MPMQIRHSPR PCARGPHAPS ATGPGAPGWT AKMLRPAGAL ERRDGPRPML VPSAARSQLK ILHPSTSPSH GATTATRAVA GSNVQTTSAA TSARVQGKLL
101: LQSSDSPSSP LRLSLQLVSA TVAGRDERGV RGEAAALDAV ISSGETEVDV ELLWDEALGA PGAVLVTNNS DFPVYLKLLS LSSPAVHFVC NGWVYPVGKH
201: PYRLFFTNDA YVKEKTPPAL RKDREDELRL LRGEGAPADA PLQKWDRVYD YALYNDLGNP DLREDLARPV LGGSEEYPYP RRTRTSRPPS KADPASETRA
301: SLEEGVYIPC DERTGAVAKA PNLPKLEGHF GSLADVHGLF DTNAKPIAFP VPQVISANRT AWRTDEEFAR QTLAGTNPLS IELVTGLPLT SKLDRALYGD
401: QDSKITKEHI EKNLGNMTVA QAIEKDRLYV VDHHDWVMPY LKRINELPGD EEKGEISERK SYATRTLFFL QDDSTLKPLA IELSSPHPED ERLGATSTVY
501: TPPDQLKAGE AASDTFTAWD LAKAHAASND ACKNNYVLHW LRTHATMEPV VIAANRQLSV LHPIHKLLKP HFRNTLDTNS TARHIVIGSG DERQGGAFYR
601: NMHEVNFFTG KYGMEMSSKA YASFNFTELA FPNELIKRGM VRGAPKKPEE LELPRNDELN ILTAIWKWVT ELFFPNEHIK TGVARGDPKK AEELELLIKD
701: YPYAVDGLEI WTAIKEWVTD YCAIYYAEGD GAVAGDSELQ AWWSEVRNVG HGDLSDAPWW PAMDSVGDLV ETCATIIWLG SAYHSAVSFG QYAYNGFVPN
801: RPTVTSGEMP AGAGAAVTEA EFLGHITPKN EAFGLMALTM SPPVKPGEPL MGERPDTARW TSEQRAAKAL LEFNAKLDAV AEAVKKRNAD GALRNRNGPV
901: EVPYTLLAPR ADPAVPHVGG IPNSIAV

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.