Factsheet for TraesCS5A01G378800.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G382400.1	Wheat	cytosol, golgi	96.79	87.97
TraesCS5A01G378900.1	Wheat	cytosol	92.16	82.99
TraesCS4A01G275800.1	Wheat	cytosol	24.42	79.5
TraesCS4A01G359800.1	Wheat	cytosol	53.47	78.34
TraesCS5A01G379000.1	Wheat	nucleus, unclear	77.38	78.18
TraesCS5A01G378700.1	Wheat	cytosol	82.9	74.65
Os03t0738600-01	Rice	plasma membrane, plastid	77.12	68.97
EES04025	Sorghum	cytosol	75.96	68.09
Zm00001d042541_P002	Maize	cytosol	75.58	66.52
EES04028	Sorghum	cytosol	73.78	65.75
Zm00001d042540_P008	Maize	cytosol	73.39	64.01
KRH35534	Soybean	cytosol	36.63	63.62
CDY70916	Canola	cytosol	39.07	60.32
PGSC0003DMT400063654	Potato	cytosol	37.66	59.67
TraesCS4A01G275900.1	Wheat	cytosol, unclear	65.94	58.43
KRH16725	Soybean	cytosol	17.22	58.01
KRH62399	Soybean	cytosol, endoplasmic reticulum	17.48	57.63
KRH57987	Soybean	cytosol	18.77	56.59
KRH62403	Soybean	cytosol, endoplasmic reticulum	16.32	55.95
TraesCS6A01G132200.1	Wheat	mitochondrion	62.34	55.56
TraesCS6A01G132500.1	Wheat	mitochondrion	62.34	55.56
GSMUA_Achr1P22970_001	Banana	cytosol	60.03	55.2
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	60.54	54.7
VIT_14s0128g00780.t01	Wine grape	cytosol	60.28	54.6
PGSC0003DMT400028158	Potato	cytosol	60.03	54.18
VIT_14s0128g00790.t01	Wine grape	cytosol	60.03	53.74
PGSC0003DMT400054145	Potato	cytosol	59.13	53.61
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	59.38	53.6
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	58.87	53.26
KRG91271	Soybean	cytosol	58.48	53.03
PGSC0003DMT400063446	Potato	cytosol	54.5	52.74
PGSC0003DMT400063477	Potato	cytosol	57.58	52.34
Solyc01g099200.2.1	Tomato	cytosol, plastid	56.56	52.32
Solyc01g099180.2.1	Tomato	cytosol	56.94	51.87
PGSC0003DMT400063469	Potato	cytosol	56.04	51.72
Bra021322.1-P	Field mustard	cytosol	56.94	51.69
PGSC0003DMT400081370	Potato	cytosol	58.1	51.54
KRH68548	Soybean	cytosol	56.81	51.52
Solyc01g099210.2.1	Tomato	cytosol	57.07	51.45
Solyc09g075860.2.1	Tomato	cytosol, nucleus	57.97	51.43
VIT_06s0004g01580.t01	Wine grape	cytosol	21.98	51.04
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	56.17	50.93
VIT_05s0020g03170.t01	Wine grape	cytosol	57.2	50.8
AT1G55020.1	Thale cress	cytosol	55.91	50.64
KRH13357	Soybean	endoplasmic reticulum	15.68	50.41
KRH10050	Soybean	endoplasmic reticulum	55.53	50.41
KRH33939	Soybean	cytosol, endoplasmic reticulum	55.91	50.29
PGSC0003DMT400063461	Potato	cytosol	44.6	50.0
KRH10051	Soybean	endoplasmic reticulum, nucleus	55.01	50.0
Solyc09g075870.1.1	Tomato	cytosol	54.63	49.77
KRH23266	Soybean	cytosol	52.44	49.39
KRH10053	Soybean	endoplasmic reticulum	54.11	49.36
KRH44095	Soybean	endoplasmic reticulum	54.88	49.31
KRH23265	Soybean	endoplasmic reticulum, nucleus	54.76	49.19
KRH23268	Soybean	endoplasmic reticulum	53.86	49.12
KRH44093	Soybean	endoplasmic reticulum	53.34	49.05
KRH44097	Soybean	cytosol, endoplasmic reticulum	54.63	48.96
PGSC0003DMT400063452	Potato	cytosol	50.26	48.94
Bra039948.1-P	Field mustard	cytosol	55.66	48.82
KRH44090	Soybean	endoplasmic reticulum	53.6	48.49
CDY38326	Canola	cytosol	55.14	48.37
CDY46325	Canola	cytosol	54.5	48.07
KRH23269	Soybean	endoplasmic reticulum	50.77	48.05
KRH44094	Soybean	endoplasmic reticulum	53.47	47.98
KRH47522	Soybean	endoplasmic reticulum, nucleus	53.34	47.98
AT3G22400.1	Thale cress	cytosol	54.63	47.97
KRH47069	Soybean	endoplasmic reticulum	28.02	47.91
KRH47066	Soybean	endoplasmic reticulum, nucleus	52.7	47.73
KRH47525	Soybean	endoplasmic reticulum	53.21	47.7
KRH47067	Soybean	endoplasmic reticulum	52.83	47.57
Bra023829.1-P	Field mustard	cytosol	54.76	47.18
CDY64191	Canola	cytosol	54.63	46.86
KRH44092	Soybean	nucleus	50.26	45.62
TraesCS1A01G212900.1	Wheat	cytosol	46.02	42.42
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	27.51	41.88
KRH47064	Soybean	endoplasmic reticulum	29.95	40.88
KRG88464	Soybean	cytosol	23.52	40.13
TraesCS7A01G034900.1	Wheat	mitochondrion	14.52	38.57
Solyc01g099150.2.1	Tomato	nucleus	42.67	38.52
CDY43490	Canola	cytosol, plasma membrane	56.94	36.82
TraesCS4A01G009400.1	Wheat	plastid	42.93	36.19
TraesCS2A01G525500.1	Wheat	plastid	43.06	36.14
TraesCS6A01G166000.1	Wheat	golgi	41.65	35.96
TraesCS2A01G315100.2	Wheat	plastid	43.06	35.64
TraesCS5A01G007900.1	Wheat	plastid	42.29	35.45
TraesCS7A01G246200.1	Wheat	plastid	42.03	35.12
TraesCS5A01G032800.1	Wheat	mitochondrion	33.03	29.92

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF54	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS5A01G378800
EnsemblPlants:TraesCS5A01G378800.2	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:575901036..575903854

Molecular Weight (calculated)

87801.7 Da

IEP (calculated)

5.897

GRAVY (calculated)

-0.281

Length

778 amino acids

Sequence
(BLAST)

001: TSRVLTVGDS KFSVAFDWAV DKLGVPGAII VKNNHASEFF LKTITLDDVP GHGAVVFVAN SWVYPQDMYR YNRVFFANNT YLPTKMPVAL KPYRDDELRN
101: LRGDDQQGPY EAHDRVYRYD VYNDLGDSRQ ILGGSKDFPY PRRCRTGRKL SQTNPDRESR LLPLVQSIYV PRDELFGHLK QSDFLGYSLK ALVDGIIPAI
201: RTYVVLSPGE FDSFADILKL CEGGIKLPNI PALEEMRKRF PLELVKDLIP MGGDYLLKLP KPQVIKEDEI AWMTDEEFAR EILAGVNPMM ITRVTEFPPK
301: STLDPSQYGD HTSTITEAHI GNSLEGLTAQ QAMASNRLYI LDHHDNMMPY LVRLNNLDDT FLYATRTLFF LRGDGTLAPV AIELSTPLLQ GGLTTAKSTV
401: YTPASTGVEA WIWQLAKAYV CVNDYGYHQL VSHWLNTHAV MEPFIIATNR QLSVTHPVHK LLQPHYRDTM NINSRARELL INAGGVIELT VFQRKYATEM
501: SSVTYKDWNF NEQALPDDLI KRGMAVPDPS SPHKVRLLLE DYPYAVDGLA IWTVIERWVT EYLAIYYTSD SVLQGDVELQ AWWKEVRDVG HGDLKDAAWW
601: PEMKTVAELV KACTTIIWTG SALHAAVNFG QYPYAGYHPN KPSASRRPMP EPGTEEYAML AREPEKVFIH TITNQVQAII GISLLEILSK HSSDEIYLGQ
701: RDTPEWTSDA KALEAFERFG TRLEGIESEV VALNGNPQLK NRNGPVKFPY MLLYPNTSDH NGDATGLTAR GIPNSISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.