CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042541_P002	Maize	cytosol	92.86	91.18
EES04028	Sorghum	cytosol	82.14	81.67
Os03t0738600-01	Rice	plasma membrane, plastid	76.38	76.21
TraesCS5A01G378800.2	Wheat	cytosol	68.09	75.96
TraesCS5B01G382300.1	Wheat	cytosol, unclear	75.35	75.69
TraesCS5B01G382400.1	Wheat	cytosol, golgi	74.42	75.47
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	74.88	75.23
TraesCS5A01G378700.1	Wheat	cytosol	74.77	75.12
TraesCS5B01G382600.1	Wheat	cytosol	74.31	74.91
EER93612	Sorghum	cytosol	74.42	74.6
TraesCS4A01G359800.1	Wheat	cytosol	45.62	74.58
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	73.96	74.31
TraesCS5A01G378900.1	Wheat	cytosol	73.5	73.84
HORVU5Hr1G093770.1	Barley	cytosol	73.16	73.58
TraesCS5D01G388800.1	Wheat	cytosol	73.73	71.35
TraesCS5A01G379000.1	Wheat	nucleus, unclear	62.56	70.52
TraesCS5D01G513100.1	Wheat	cytosol	67.86	67.86
HORVU5Hr1G117110.1	Barley	cytosol	67.28	65.84
EER93611	Sorghum	cytosol	65.32	63.85
KXG37783	Sorghum	cytosol	63.82	62.04
KRH16725	Soybean	cytosol	16.47	61.9
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	34.68	61.68
KRH35534	Soybean	cytosol	31.68	61.38
CDY70916	Canola	cytosol	35.6	61.31
GSMUA_Achr1P22970_001	Banana	cytosol	58.41	59.93
PGSC0003DMT400063654	Potato	cytosol	33.87	59.88
KRH62399	Soybean	cytosol, endoplasmic reticulum	16.24	59.75
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	58.53	58.93
PGSC0003DMT400063446	Potato	cytosol	54.03	58.33
VIT_14s0128g00780.t01	Wine grape	cytosol	57.6	58.21
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	57.49	57.96
PGSC0003DMT400028158	Potato	cytosol	57.49	57.89
KRH62403	Soybean	cytosol, endoplasmic reticulum	15.09	57.71
KRH57987	Soybean	cytosol	17.05	57.36
Bra021322.1-P	Field mustard	cytosol	56.45	57.18
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	56.57	57.09
VIT_14s0128g00790.t01	Wine grape	cytosol	57.03	56.96
PGSC0003DMT400054145	Potato	cytosol	56.11	56.76
Solyc09g075860.2.1	Tomato	cytosol, nucleus	57.14	56.56
PGSC0003DMT400081370	Potato	cytosol	57.14	56.56
AT1G55020.1	Thale cress	cytosol	55.41	56.0
KRH68548	Soybean	cytosol	55.3	55.94
Solyc01g099180.2.1	Tomato	cytosol	54.84	55.74
KRH10050	Soybean	endoplasmic reticulum	54.95	55.66
VIT_05s0020g03170.t01	Wine grape	cytosol	55.99	55.48
KRG91271	Soybean	cytosol	54.72	55.36
PGSC0003DMT400063452	Potato	cytosol	50.92	55.32
KRH33939	Soybean	cytosol, endoplasmic reticulum	54.84	55.03
PGSC0003DMT400063477	Potato	cytosol	54.15	54.91
KRH10051	Soybean	endoplasmic reticulum, nucleus	54.15	54.91
Solyc01g099210.2.1	Tomato	cytosol	54.49	54.81
KRH23265	Soybean	endoplasmic reticulum, nucleus	54.61	54.73
Solyc01g099200.2.1	Tomato	cytosol, plastid	53.0	54.7
PGSC0003DMT400063469	Potato	cytosol	53.11	54.69
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	54.03	54.66
PGSC0003DMT400063461	Potato	cytosol	43.66	54.61
KRH44090	Soybean	endoplasmic reticulum	53.8	54.3
KRH10053	Soybean	endoplasmic reticulum	53.23	54.16
KRH44093	Soybean	endoplasmic reticulum	52.77	54.14
KRH23266	Soybean	cytosol	51.15	53.75
Solyc09g075870.1.1	Tomato	cytosol	52.88	53.75
KRH23268	Soybean	endoplasmic reticulum	52.77	53.69
KRH47067	Soybean	endoplasmic reticulum	53.34	53.59
KRH47066	Soybean	endoplasmic reticulum, nucleus	52.88	53.43
KRH44097	Soybean	cytosol, endoplasmic reticulum	53.34	53.34
KRH13357	Soybean	endoplasmic reticulum	14.86	53.31
KRH47522	Soybean	endoplasmic reticulum, nucleus	53.0	53.18
AT3G22400.1	Thale cress	cytosol	54.26	53.16
KRH44095	Soybean	endoplasmic reticulum	53.0	53.12
KRH23269	Soybean	endoplasmic reticulum	50.23	53.04
Bra039948.1-P	Field mustard	cytosol	53.8	52.65
CDY46325	Canola	cytosol	53.46	52.61
KRH47525	Soybean	endoplasmic reticulum	52.3	52.3
CDY38326	Canola	cytosol	53.34	52.2
KRH44094	Soybean	endoplasmic reticulum	51.84	51.9
VIT_06s0004g01580.t01	Wine grape	cytosol	19.82	51.34
Bra023829.1-P	Field mustard	cytosol	53.34	51.27
KRH47069	Soybean	endoplasmic reticulum	26.84	51.21
CDY64191	Canola	cytosol	53.11	50.83
KRH44092	Soybean	nucleus	47.93	48.54
KRG88464	Soybean	cytosol	25.35	48.25
KRH47064	Soybean	endoplasmic reticulum	30.99	47.19
KXG24148	Sorghum	cytosol	43.89	44.46
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	25.23	42.86
Solyc01g099150.2.1	Tomato	nucleus	41.13	41.42
OQU80925	Sorghum	cytosol	40.9	41.04
CDY43490	Canola	cytosol, plasma membrane	56.34	40.65
KXG27309	Sorghum	mitochondrion, plastid	42.05	40.24
KXG23911	Sorghum	cytosol, plastid	25.12	40.0
EER95400	Sorghum	mitochondrion	41.94	39.39
EES10882	Sorghum	plastid	41.01	38.53
KXG29701	Sorghum	plastid	40.09	37.95

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
EntrezGene:8078665	ProteinID:ACV84251.1	UniProt:C5XES4	EnsemblPlants:EES04025	ProteinID:EES04025	ProteinID:EES04025.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF54	SMART:SM00308	EnsemblPlantsGene:SORBI_3003G385500	SUPFAM:SSF48484	SUPFAM:SSF49723
unigene:Sbi.18714	UniParc:UPI0001A853E9	RefSeq:XP_002458905.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:69796879..69800694

Molecular Weight (calculated)

97546.4 Da

IEP (calculated)

6.560

GRAVY (calculated)

-0.319

Length

868 amino acids

Sequence
(BLAST)

001: MIGKIIGDIT GSNKHAQLKG NVVLVRKTVL GLDVTSIAGS LLDGVGEFLG RGVTCQLISS TVVDPNNGNR GKVGAEASLE KWLLNPPPLL SGENKFHVTF
101: DWEVEKQGIP GAIIVKNNHA SEFFLKTITL DDVPGHGTVV FVANSWIYPQ SKYRYNRVFF SNDTYLPSQM PAALKPYRDD ELRNLRGDDQ QGPYKEHDRV
201: YRYDVYNDLG LPDSGNPRPV LGGNKELPYP RRCRTGRKPT RTDPNSERRL TVVEGDVYVP RDERFGHIKK SDFYGYAIKA LVNAVIPAIR TYVDLSPGEF
301: NSFKDIIKLY EGGIQLPKIP VLEDLRKQFP LELVKDVLPV GGDYLLKLPM PQIIKEDKTG WMTDEEFGRE ILAGVNPMIV RRLTEFPPRS TLDPSKYGDH
401: TSTITEAHLE NKLEGLTVQQ ALEGNRLYIL DHHDNFMPFL IRINNLEGNF IYATRTVLFL RGDGTLVPVA IELSLPELRD GLTTAKSTVY TPTSTTGAEA
501: WVWHLAKAFA NVTDYCWHQL VSHWLNTHAV MEPFIIATNR QLSVTHPVHK LLLPHYRDTM NINSNARQML VNAGGLFETT VFPRQYAFEM SAVIYKNWNF
601: TEQALPDDLI KRGMAVADAS SPYKVKLLVE DYPYASDGLA IWHAIEQWVT EYLGIYYPND GVLQADVELQ AWWKEVREVG HADLKDEPWW PKMETVAELV
701: KACTTIIWIA SALHAAVNFG QYPYAGYIPN RPSVSRKPMP APGSEEYAEL GKNPEKVFVR TITSQFQTLV GISLLEILSS HSSDEVYLGQ RDTPEWTSDA
801: KAQEAFRRFG ARLTEIESRV MTMNADPSLK NRNGPAKFPY TLLYPNTSDK NGDAAGITAK GIPNSISI

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.