CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

plastid 1
vacuole 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23269	Soybean	endoplasmic reticulum	91.24	95.01
KRH10053	Soybean	endoplasmic reticulum	91.24	91.56
KRH23268	Soybean	endoplasmic reticulum	89.84	90.15
KRH16725	Soybean	cytosol	24.07	89.18
KRH62399	Soybean	cytosol, endoplasmic reticulum	24.18	87.71
KRH62403	Soybean	cytosol, endoplasmic reticulum	22.9	86.34
KRH57987	Soybean	cytosol	25.35	84.11
KRH44097	Soybean	cytosol, endoplasmic reticulum	75.93	74.88
KRH10050	Soybean	endoplasmic reticulum	74.77	74.68
KRH44095	Soybean	endoplasmic reticulum	75.0	74.13
KRH47069	Soybean	endoplasmic reticulum	38.78	72.97
KRH13357	Soybean	endoplasmic reticulum	19.86	70.25
KRH47522	Soybean	endoplasmic reticulum, nucleus	68.46	67.75
KRH47067	Soybean	endoplasmic reticulum	67.99	67.36
KRH23265	Soybean	endoplasmic reticulum, nucleus	67.99	67.21
KRH44090	Soybean	endoplasmic reticulum	67.17	66.86
KRH23266	Soybean	cytosol	64.37	66.71
KRH47066	Soybean	endoplasmic reticulum, nucleus	66.94	66.71
KRH44094	Soybean	endoplasmic reticulum	67.52	66.67
KRH44093	Soybean	endoplasmic reticulum	64.6	65.37
KRH47525	Soybean	endoplasmic reticulum	65.3	64.4
KRH47064	Soybean	endoplasmic reticulum	42.41	63.68
KRH35534	Soybean	cytosol	32.24	61.61
KRH68548	Soybean	cytosol	60.98	60.84
TraesCS4A01G275800.1	Wheat	cytosol	16.71	59.83
TraesCS4A01G359800.1	Wheat	cytosol	36.45	58.76
Os03t0700400-00	Rice	cytosol, plasma membrane	8.53	57.94
KRH33939	Soybean	cytosol, endoplasmic reticulum	58.41	57.8
GSMUA_AchrUn_...	Banana	cytosol	52.92	57.78
GSMUA_AchrUn_...	Banana	cytosol	57.24	57.31
GSMUA_Achr1P22970_001	Banana	cytosol	56.07	56.74
GSMUA_Achr1P24370_001	Banana	cytosol	55.72	56.32
KRH44092	Soybean	nucleus	55.61	55.54
KRG91271	Soybean	cytosol	55.49	55.36
GSMUA_Achr6P25110_001	Banana	cytosol	51.17	55.16
TraesCS5A01G378800.2	Wheat	cytosol	50.0	55.01
Zm00001d033623_P003	Maize	cytosol	55.49	54.79
GSMUA_Achr6P25090_001	Banana	cytosol	53.39	54.53
Os03t0699700-01	Rice	cytosol, plastid	54.67	54.23
EER93612	Sorghum	cytosol	54.79	54.16
EES04025	Sorghum	cytosol	54.91	54.15
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	55.26	53.93
TraesCS5B01G382600.1	Wheat	cytosol	54.21	53.89
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	53.86	53.54
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	53.97	53.47
Os03t0738600-01	Rice	plasma membrane, plastid	54.32	53.45
TraesCS5A01G378700.1	Wheat	cytosol	53.86	53.36
TraesCS5B01G382300.1	Wheat	cytosol, unclear	53.86	53.36
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	55.26	53.33
TraesCS5B01G382400.1	Wheat	cytosol, golgi	53.27	53.27
EER93611	Sorghum	cytosol	55.26	53.27
TraesCS5A01G378900.1	Wheat	cytosol	53.74	53.24
HORVU5Hr1G093770.1	Barley	cytosol	53.62	53.19
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	53.62	53.12
TraesCS4B01G037700.3	Wheat	cytosol, golgi	53.27	52.96
TraesCS4D01G035200.1	Wheat	cytosol	51.17	52.83
Zm00001d042541_P002	Maize	cytosol	54.32	52.6
TraesCS6D01G122000.1	Wheat	cytosol	19.04	52.58
Zm00001d033624_P001	Maize	cytosol	54.44	52.54
KXG37783	Sorghum	cytosol	54.32	52.07
EES04028	Sorghum	cytosol	52.92	51.89
TraesCS5A01G379000.1	Wheat	nucleus, unclear	46.61	51.82
TraesCS4D01G035100.1	Wheat	cytosol	53.04	51.71
TraesCS4A01G275900.1	Wheat	cytosol, unclear	52.92	51.59
TraesCS4B01G037800.1	Wheat	cytosol	52.92	51.59
TraesCS5D01G388800.1	Wheat	cytosol	53.97	51.51
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	52.57	51.25
Zm00001d042540_P008	Maize	cytosol	53.15	51.01
TraesCS5D01G513100.1	Wheat	cytosol	51.4	50.69
GSMUA_Achr9P19250_001	Banana	plasma membrane	56.31	50.68
TraesCS3B01G602500.1	Wheat	cytosol	51.75	50.28
HORVU5Hr1G117110.1	Barley	cytosol	51.87	50.06
TraesCS3B01G605700.1	Wheat	cytosol	51.64	49.94
TraesCS6B01G160400.1	Wheat	mitochondrion	50.82	49.83
TraesCS6A01G132200.1	Wheat	mitochondrion	50.58	49.6
TraesCS6A01G132500.1	Wheat	mitochondrion	50.58	49.6
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	28.15	49.39
KRG88464	Soybean	cytosol	25.82	48.46
GSMUA_Achr6P25080_001	Banana	cytosol	42.99	47.48
TraesCS6B01G395700.1	Wheat	cytosol	44.86	47.29
Os11t0575600-01	Rice	mitochondrion	47.55	46.89
TraesCS6D01G121900.1	Wheat	mitochondrion	23.6	45.19
KRH07345	Soybean	cytosol, plastid	42.76	42.51
KRH66214	Soybean	cytosol	42.99	42.49
KRG89883	Soybean	cytosol, plastid	42.17	42.03
KRG89889	Soybean	cytosol, plastid	42.06	41.86
KRH69027	Soybean	plastid	43.34	41.18
KRH29669	Soybean	plastid	42.87	40.73
KRG97300	Soybean	plastid	42.76	40.71
KRH06197	Soybean	nucleus	43.69	40.56
KRH29668	Soybean	nucleus	42.87	40.51
KRH42646	Soybean	plastid	43.57	40.5
KRH47615	Soybean	nucleus	43.81	40.45
KRG89888	Soybean	nucleus	42.64	40.42
KRH17965	Soybean	plastid	43.22	40.3
KRH10882	Soybean	cytosol	20.33	40.09
KRH18682	Soybean	cytosol, mitochondrion	42.41	39.85
KRH24671	Soybean	cytosol, plastid	42.17	39.5
KRH21441	Soybean	cytosol	39.02	36.7
KRH50048	Soybean	cytosol	37.5	35.27
KRH30640	Soybean	cytosol	7.59	34.76
GSMUA_Achr6P25100_001	Banana	cytosol	42.06	3.0

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100803358	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
MapMan:50.1.12	ProteinID:ABX60411.1	EMBL:ACUP02009117	UniProt:B3TDK9	EnsemblPlantsGene:GLYMA_15G026400	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433
EnsemblPlants:KRH10051	ProteinID:KRH10051	ProteinID:KRH10051.1	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477
InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711
PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF48	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	UniParc:UPI000178CA74	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:2130531..2134563

Molecular Weight (calculated)

96381.9 Da

IEP (calculated)

6.808

GRAVY (calculated)

-0.338

Length

856 amino acids

Sequence
(BLAST)

001: MFGIIGGNKG HKIKGNLVIM RKNVLDINSI TSVKGVIGTG INIIGGVVDT VTALASHISI QLISATKADG HGKGKVGKAT NLRGQVSLPT LGAGEDAYDV
101: HFEWDSDFGI PGAFYIKNFM QVEFYLKSLT LEDIPNHGTI HFVCNSWVYN SKSYHSDRIF FANNTYLPSE TPAPLVKYRE EELKNVRGDG TGERKEWDRI
201: YDYDVYNDLG DPDKGEKYAR PVLGGSALPY PRRGRTGRGK TRKDPNSEKP SDFVYLPRDE AFGHLKSSDF LVYGIKSVAQ DVLPVLTDAF DGNLLSLEFD
301: NFAEVRKLYE GGVTLPTNFL SKIAPIPVVK EIFRTDGEQF LKYPPPKVMQ VDKSAWMTDE EFARETIAGV NPNVIKILEE FPPRSKLDSQ AYGDHTSIIT
401: KQHLEPNLGG LTVEQAIQSK KLFILDHHDY LIPYLRKINA TTTKTYATRT IFFLKSDGTL TPLAIELSKP HPQGEGYGPV SEVYVPSSEG VEAYIWLLAK
501: AYVVVNDSCY HQLVSHWLNT HAVVEPFVIA TNRHLSVVHP IYKLLFPHYR DTMNINSLAR KSLVNADGII EKTFLWGRYS LEMSAVIYKD WVFTDQALPN
601: DLVKRGVAVK DPSAPHGVRL LIEDYPYASD GLEIWDAIKS WVHEYVSFYY KSDAAIQQDP ELQAWWKELV QVGHGDLKDK PWWQKMQTRE ELIEASATLV
701: WIASALHAAV NFGQYPYGGL ILNRPTISRR FMPEKGSAEY AALAKNPEKE FLKTITGKKE TLIDLTIIEI LSRHTSDEFY LGERDGGDYW TSDAGPLEAF
801: KRFGKKLQEI EQKLIQKNKD ETLRNRSGPA KMPYTLLYPS SEEGLTFRGI PNSISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.