CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90357
KRH08499
KRH33614
KRH70165

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	KRH08499	AT5G18110.1	11117257
AT3G45140.1	KRH70165	AT5G18110.1	11117257
AT3G45140.1	KRG90357	AT5G35620.1	11117257
AT3G45140.1	KRH33614	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009680.2.1	Tomato	plastid	36.18	73.59
VIT_06s0004g01500.t01	Wine grape	cytosol	59.71	68.02
Os12t0559934-00	Rice	cytosol	14.54	67.18
PGSC0003DMT400020118	Potato	cytosol	51.39	66.81
VIT_06s0004g01480.t01	Wine grape	cytosol	58.49	66.46
VIT_06s0004g01510.t01	Wine grape	plastid	66.04	66.04
CDY61034	Canola	cytosol	32.74	66.0
CDY72550	Canola	cytosol	23.42	65.73
HORVU3Hr1G047210.1	Barley	cytosol	15.54	64.52
CDY07409	Canola	cytosol	27.64	64.34
PGSC0003DMT400081909	Potato	plastid	63.82	63.96
Solyc01g006540.2.1	Tomato	plastid	63.6	63.95
KRH29668	Soybean	nucleus	63.93	63.58
KRH24671	Soybean	cytosol, plastid	64.37	63.46
Solyc01g006560.2.1	Tomato	plastid	63.15	63.08
VIT_06s0004g01460.t01	Wine grape	plastid	41.73	62.88
VIT_06s0004g01470.t01	Wine grape	cytosol	62.6	62.46
CDY70843	Canola	cytosol	8.66	61.9
KRG89889	Soybean	cytosol, plastid	58.38	61.16
KRG89883	Soybean	cytosol, plastid	58.05	60.88
GSMUA_Achr3P11780_001	Banana	plastid	56.83	60.52
KRG89888	Soybean	nucleus	60.16	60.02
CDY61881	Canola	cytosol	23.53	59.72
Solyc12g011040.1.1	Tomato	nucleus, plastid	58.93	59.53
KRH17965	Soybean	plastid	60.04	58.93
KRH18682	Soybean	cytosol, mitochondrion	58.93	58.29
GSMUA_Achr9P12470_001	Banana	plastid	54.49	58.24
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	54.72	57.39
Zm00001d053675_P001	Maize	plastid	56.83	56.57
HORVU6Hr1G033600.1	Barley	plastid	55.72	56.03
OQU80925	Sorghum	cytosol	53.72	55.95
AT3G45140.1	Thale cress	plastid	55.6	55.92
CDY04196	Canola	plastid	55.16	55.91
CDX91565	Canola	plastid	55.6	55.67
TraesCS6B01G193400.1	Wheat	plastid	55.6	55.6
Bra004059.1-P	Field mustard	plastid	53.39	55.54
Bra004057.1-P	Field mustard	cytosol	54.83	55.44
TraesCS6A01G166000.1	Wheat	golgi	55.38	55.38
TraesCS6D01G154600.1	Wheat	plastid	55.38	55.38
CDY16339	Canola	plastid	46.73	55.32
CDX79416	Canola	plastid	55.49	55.31
Zm00001d015852_P004	Maize	plastid	55.72	55.1
CDX67920	Canola	plastid	55.16	54.98
Bra003526.1-P	Field mustard	plastid	55.05	54.87
KXG29701	Sorghum	plastid	55.83	54.85
Bra022535.1-P	Field mustard	plastid	49.06	54.5
CDY61036	Canola	plastid	53.61	54.33
Bra004060.1-P	Field mustard	plastid	54.05	54.17
Os02t0194700-01	Rice	plasma membrane	54.94	53.46
HORVU7Hr1G050680.1	Barley	peroxisome	40.51	53.36
Os08t0508800-01	Rice	nucleus, plasma membrane	54.27	52.92
TraesCS4D01G347300.1	Wheat	cytosol	51.94	52.88
TraesCS7A01G246200.1	Wheat	plastid	54.16	52.42
TraesCS7B01G145200.1	Wheat	plastid	53.83	52.26
TraesCS7D01G244800.1	Wheat	plastid	54.05	52.25
Os08t0509100-01	Rice	nucleus	54.27	51.97
TraesCS7D01G029400.1	Wheat	cytosol	15.21	51.7
TraesCS7A01G034900.1	Wheat	mitochondrion	16.76	51.54
TraesCS6B01G014400.1	Wheat	cytosol	34.07	51.08
Zm00001d031449_P001	Maize	mitochondrion	54.05	50.94
CDY61880	Canola	plastid	30.74	50.27
TraesCS5D01G013400.1	Wheat	plastid	51.28	49.78
TraesCS5A01G007900.1	Wheat	plastid	51.05	49.57
KRH35534	Soybean	cytosol	24.64	49.55
TraesCS5B01G006500.1	Wheat	plastid	50.94	49.46
HORVU5Hr1G001180.1	Barley	plastid	50.94	49.3
HORVU7Hr1G006320.4	Barley	plastid	49.06	47.68
HORVU6Hr1G000510.1	Barley	plastid	48.95	47.32
TraesCS6D01G010100.1	Wheat	plastid	49.17	47.18
CDY07408	Canola	plastid	23.86	46.94
CDY70245	Canola	plastid	23.86	46.94
Bra004058.1-P	Field mustard	plastid	54.83	46.69
Os12t0559200-01	Rice	plastid	47.28	46.2
KRH42646	Soybean	plastid	47.17	46.15
CDY07407	Canola	cytosol, plastid	55.6	45.67
KRH06197	Soybean	nucleus	46.28	45.23
KRH47615	Soybean	nucleus	46.5	45.2
TraesCS5D01G041100.1	Wheat	plastid	47.28	45.08
KRH69027	Soybean	plastid	44.95	44.95
TraesCS5B01G033000.1	Wheat	plastid	47.28	44.84
KRH16725	Soybean	cytosol	11.43	44.59
Os12t0560200-00	Rice	cytosol	4.88	44.44
KRG97300	Soybean	plastid	44.28	44.38
KRH57987	Soybean	cytosol	12.54	43.8
KRH10882	Soybean	cytosol	21.09	43.78
KRH62399	Soybean	cytosol, endoplasmic reticulum	11.32	43.22
KRG91271	Soybean	cytosol	41.07	43.12
KRH10050	Soybean	endoplasmic reticulum	40.95	43.06
KRH44094	Soybean	endoplasmic reticulum	41.4	43.02
KRH33939	Soybean	cytosol, endoplasmic reticulum	41.29	43.01
KRH10051	Soybean	endoplasmic reticulum, nucleus	40.73	42.87
KRH47067	Soybean	endoplasmic reticulum	41.07	42.82
CDY70606	Canola	plastid	18.76	42.78
KRH62403	Soybean	cytosol, endoplasmic reticulum	10.77	42.73
KRH23268	Soybean	endoplasmic reticulum	40.4	42.67
KRH68548	Soybean	cytosol	40.51	42.54
KRH44090	Soybean	endoplasmic reticulum	40.51	42.44
KRH10053	Soybean	endoplasmic reticulum	40.18	42.44
KRH47525	Soybean	endoplasmic reticulum	40.84	42.4
KRH47066	Soybean	endoplasmic reticulum, nucleus	40.4	42.37
KRH44095	Soybean	endoplasmic reticulum	40.51	42.15
CDY61882	Canola	plastid	18.09	42.12
KRH44093	Soybean	endoplasmic reticulum	39.51	42.08
KRH23265	Soybean	endoplasmic reticulum, nucleus	40.29	41.92
KRH23266	Soybean	cytosol	38.4	41.89
KRH44097	Soybean	cytosol, endoplasmic reticulum	40.18	41.71
KRH47522	Soybean	endoplasmic reticulum, nucleus	39.84	41.5
KRH23269	Soybean	endoplasmic reticulum	37.85	41.48
KRH47069	Soybean	endoplasmic reticulum	20.75	41.1
KRH21441	Soybean	cytosol	40.84	40.44
TraesCS5A01G032800.1	Wheat	mitochondrion	38.29	40.16
KRH44092	Soybean	nucleus	38.07	40.02
KRH30640	Soybean	cytosol	8.21	39.57
KRH47064	Soybean	endoplasmic reticulum	24.86	39.3
KRH13357	Soybean	endoplasmic reticulum	10.54	39.26
KRH50048	Soybean	cytosol	39.29	38.9
KRH07345	Soybean	cytosol, plastid	34.18	35.77
KRH66214	Soybean	cytosol	34.3	35.68
KRG88464	Soybean	cytosol	17.76	35.09

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100787202	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10
Gene3D:4.10.375.10	EMBL:ACUP02006815	EnsemblPlantsGene:GLYMA_11G130300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	UniProt:K7LPI4	EnsemblPlants:KRH29669
ProteinID:KRH29669	ProteinID:KRH29669.1	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
UniParc:UPI000233D281	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:9925260..9936297

Molecular Weight (calculated)

102633.0 Da

IEP (calculated)

6.021

GRAVY (calculated)

-0.404

Length

901 amino acids

Sequence
(BLAST)

001: MLMQQVHVSN PSSSCLILQK PCLRDITHPS FQLWSRPSSF PNQRKQKRVS YGCRSNGNKI KAVAVTEAEN KSVKVKATIT VQPTVGGIFS EMAIERGLDD
101: IKDLLGQSIL LELASTELDP KTKLEKETIK DYAHSKHRSA QEVKYEGEFE VPDNFGEVGA IFVTNEHHRE MFIKDIVLDG FLLGPVKFTC ESWVHSKYDN
201: PAKRVFFSNK SYLPSETPEG VKRLREEELE QLRGNGQGER KSFERIYDYD VYNDLGDPDS SDDLKRPVLG GNQHPYPRRC RTGRPRCDKD PLSEKRSSTV
301: YVPRDESFSE VKQLTFSTKT LSSGLKALVP ALKTLIVDKN LGFPVFSAID DLFDEGLYLP PLKGIRSILP RLVRHIKDIQ EDILLFDPPA TMNKDRFFWL
401: RDEEFGRQTL AGLNPCCIQL VTEWPLKSKL DPEIYGPAES AITTEIVERE IRGFNTVEEA IKQKKLFILD YHDLLLPLVK DVRELEGTTL YGSRALFFLT
501: REGTLRPLAI ELTRPPMDGK PQWKEVFTPC WHSTGVWLWR LAKLHILAHD SGYHQLVSHW LRTHCATEPY ILATNRQLSA MHPIYRLLHP HFRYTMEINA
601: LAREALINGD GIIESSFSPG KHSILLSSIA YDQQWQFDLQ SLPKDLISRG MAVEDPTAPH GLKLIIEDYP YANDGLVLWD ALKTWFTEYV NLYYADDGSI
701: VSDTELQAWW EEIRTVGHGD KKDEPWWPVL KTKLDLIDIV TTIAWTTSGH HAAVNFGQFS FAGYFPNRPT IARNNMPSED PSDAEWELFL EKPEVIMLKC
801: FPSQIQATTV MTVLDILSNH SPDEEYLGET VEPAWEEEPL VKAAFEKFRG KLIELEGIID ARNADRTRRN RNGAGIVPYE LLKPSSEPGV TGKGVPYSIS
901: I

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.