Factsheet for Zm00001d053675_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014065_P001
Zm00001d028515_P001
Zm00001d032775_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	Zm00001d028515_P001	AT5G18110.1	11117257
AT3G45140.1	Zm00001d014065_P001	AT5G35620.1	11117257
AT3G45140.1	Zm00001d032775_P002	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015852_P004	Maize	plastid	89.17	88.58
KXG29701	Sorghum	plastid	88.95	87.79
HORVU6Hr1G033600.1	Barley	plastid	73.04	73.77
TraesCS6A01G166000.1	Wheat	golgi	72.71	73.03
TraesCS6D01G154600.1	Wheat	plastid	72.71	73.03
TraesCS6B01G193400.1	Wheat	plastid	72.6	72.92
Os02t0194700-01	Rice	plasma membrane	72.15	70.52
CDY61034	Canola	cytosol	31.16	63.09
Solyc01g009680.2.1	Tomato	plastid	30.83	62.98
CDY07409	Canola	cytosol	26.85	62.79
VIT_13s0064g01500.t01	Wine grape	cytosol	17.13	62.0
CDY72550	Canola	cytosol	21.88	61.68
PGSC0003DMT400020118	Potato	cytosol	45.97	60.03
VIT_13s0064g01490.t01	Wine grape	cytosol	26.41	59.9
CDY70843	Canola	cytosol	8.18	58.73
VIT_06s0004g01500.t01	Wine grape	cytosol	50.17	57.4
VIT_06s0004g01480.t01	Wine grape	cytosol	50.17	57.25
KRH29669	Soybean	plastid	56.57	56.83
VIT_13s0064g01480.t01	Wine grape	plastid	56.69	56.81
PGSC0003DMT400081909	Potato	plastid	56.35	56.73
Solyc01g006540.2.1	Tomato	plastid	55.8	56.36
KRH24671	Soybean	cytosol, plastid	56.8	56.24
KRH29668	Soybean	nucleus	56.02	55.96
CDY61881	Canola	cytosol	21.88	55.77
VIT_06s0004g01510.t01	Wine grape	plastid	54.48	54.72
Solyc01g006560.2.1	Tomato	plastid	53.37	53.55
VIT_06s0004g01460.t01	Wine grape	plastid	35.36	53.51
KRG89883	Soybean	cytosol, plastid	50.5	53.2
KRG89889	Soybean	cytosol, plastid	50.5	53.14
VIT_06s0004g01470.t01	Wine grape	cytosol	52.82	52.93
Solyc12g011040.1.1	Tomato	nucleus, plastid	51.82	52.58
CDX91565	Canola	plastid	51.6	51.89
KRH17965	Soybean	plastid	52.6	51.85
CDY04196	Canola	plastid	50.83	51.74
Zm00001d031449_P001	Maize	mitochondrion	54.59	51.67
CDX67920	Canola	plastid	51.6	51.66
Bra003526.1-P	Field mustard	plastid	51.49	51.55
Bra004059.1-P	Field mustard	plastid	49.17	51.39
KRH18682	Soybean	cytosol, mitochondrion	51.49	51.15
CDX79416	Canola	plastid	50.94	51.0
AT3G45140.1	Thale cress	plastid	50.39	50.89
Bra004057.1-P	Field mustard	cytosol	50.06	50.84
KRG89888	Soybean	nucleus	50.72	50.83
CDY61036	Canola	plastid	49.72	50.62
Bra004060.1-P	Field mustard	plastid	50.17	50.5
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	47.73	50.29
CDY16339	Canola	plastid	42.21	50.2
Bra022535.1-P	Field mustard	plastid	44.53	49.69
CDY61880	Canola	plastid	28.29	46.46
Bra004058.1-P	Field mustard	plastid	51.27	43.86
CDY07407	Canola	cytosol, plastid	51.6	42.57
Zm00001d033623_P003	Maize	cytosol	39.67	41.41
CDY07408	Canola	plastid	20.55	40.61
CDY70245	Canola	plastid	20.55	40.61
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	39.56	40.36
Zm00001d041204_P001	Maize	cytosol	37.9	40.35
Zm00001d003533_P001	Maize	plastid	41.55	39.96
Zm00001d025524_P001	Maize	plastid	40.99	39.94
Zm00001d033624_P001	Maize	cytosol	39.12	39.91
Zm00001d042540_P008	Maize	cytosol	39.12	39.69
Zm00001d042541_P002	Maize	cytosol	38.01	38.91
Zm00001d027893_P001	Maize	plastid	41.44	38.74
CDY70606	Canola	plastid	16.91	38.73
CDY61882	Canola	plastid	16.13	37.73
Zm00001d002000_P003	Maize	cytosol, mitochondrion, plastid	34.92	34.96

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100037809	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10
Gene3D:4.10.375.10	ProteinID:ABF01001.1	ProteinID:AQK60089.1	ProteinID:AQK60092.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872
GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase
InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89
UniProt:Q06XS3	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0000E2CFEB	EnsemblPlantsGene:Zm00001d053675
EnsemblPlants:Zm00001d053675_P001	EnsemblPlants:Zm00001d053675_T001	SEG:seg	:	:	:

Description

lipoxygenase10 lipoxygenase10

Coordinates

chr4:+:238805319..238809230

Molecular Weight (calculated)

102061.0 Da

IEP (calculated)

6.543

GRAVY (calculated)

-0.388

Length

905 amino acids

Sequence
(BLAST)

001: MMNLNLKQPL VLPAHHSNVV GSRLSSSSPS AAAASRRTGG GVSSRSGSRR HVRLPRISCS ATEEVSGAVS SVTVERMLTV TASVEASPAI GQMYFQRAVD
101: DIGDLLGKTL LLELVSSELD AKSGVEKTRV TAYAHKTLRE GHYEAEFKVP ASFGPVGAVL VENEHHKEVF IKEIKLVTGG DSSTAVTFDC NSWVHSKFDN
201: PEKRIFFTLK SYLPSDTPKG LEDLRKKDLQ ALRGDGHGER KVFERVYDYD VYNDLGDPDK NPAHQRPVLG GNKQYPYPRR CRTGRPRTKK DPETEMREGH
301: NYVPRDEQFS EVKQLTFGAT TLRSGLHALL PALRPLLINK KDLRFPHFPA IDDLFSDGIP LPAQTGFDAI RTVVPRMVKL VEDTTDHVLR FEVPEMIERD
401: RFSWFKDEEF ARQTIAGLNP LCIQLLTEFP IKSKLDPEVY GPAESAITKE ILEKQMNGAL TVEQALAAKR LFILDYHDVF LPYVHKVREL QDATLYASRT
501: IFFLTDLGTL MPLAIELTRP KSPTRPQWKR AFTHGPDATD AWLWKLAKAH VLTHDTGYHQ LVSHWLRTHC CVEPYIIAAN RQLSRLHPVY RLLHPHFRYT
601: MEINALAREA LINADGIIEE SFWPGKYAVE LSSVAYGATW QFDTEALPND LIKRGLAVRG EDGELELTIK DYPYAHDGLL VWDSIRQWAS EYVNVYYKSD
701: EAVAADPELR AFWDEVRNVG HGDKKDEPWW PVLDTRDSLV ETLTTIMWVT SGHHSAVNFG QYHFAGYFPN RPTTIRKNMP VEEGGPGEEM EKFLKQPETT
801: LLDMLPTQMQ AIKVMTTLDI LSSHSPDEEY MGEFAEPSWL AEPMVKAAFE KFGGRMKEIE GFIDECNNNL DLKNRCGAGI VPYELLKPFS KPGVTGRGIP
901: SSISI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.