Factsheet for Zm00001d032775_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003147_P001
Zm00001d013999_P001
Zm00001d015852_P004
Zm00001d025777_P007
Zm00001d027318_P001
Zm00001d031449_P001
Zm00001d032668_P001
Zm00001d048526_P001
Zm00001d053675_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35620.1	Zm00001d013999_P001	AT1G17880.1	15716105
AT5G35620.1	Zm00001d027318_P001	AT1G17880.1	15716105
AT5G35620.1	Zm00001d032668_P001	AT1G17880.1	15716105
AT5G35620.1	Zm00001d048526_P001	AT1G17880.1	15716105
AT5G35620.1	Zm00001d015852_P004	AT3G45140.1	11117257
AT5G35620.1	Zm00001d031449_P001	AT3G45140.1	11117257
AT5G35620.1	Zm00001d053675_P001	AT3G45140.1	11117257
AT5G35620.1	Zm00001d003147_P001	AT5G57870.1	21798944
AT5G35620.1	Zm00001d025777_P007	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94108	Sorghum	cytosol	90.48	90.48
Zm00001d014065_P001	Maize	cytosol, extracellular	84.29	81.94
Os10t0467600-01	Rice	cytosol, plastid	75.24	76.7
TraesCS1B01G167100.1	Wheat	cytosol	73.33	73.68
HORVU1Hr1G039260.2	Barley	cytosol	72.86	72.86
TraesCS1D01G146500.1	Wheat	golgi	72.38	72.73
TraesCS1A01G149200.1	Wheat	cytosol	72.38	71.36
GSMUA_Achr4P25000_001	Banana	cytosol	64.29	70.31
VIT_05s0049g01770.t01	Wine grape	cytosol	64.76	66.67
Solyc09g090580.2.1	Tomato	nucleus	62.38	65.5
PGSC0003DMT400044186	Potato	cytosol	62.38	65.5
GSMUA_Achr5P12940_001	Banana	cytosol	63.33	63.64
KRG90357	Soybean	endoplasmic reticulum	60.48	63.5
Bra035393.1-P	Field mustard	cytosol	60.0	63.32
Bra039484.1-P	Field mustard	cytosol	59.52	63.13
KRH33614	Soybean	cytosol	61.43	62.93
CDY33686	Canola	cytosol	59.52	62.81
CDY38545	Canola	cytosol	59.05	62.63
AT5G35620.1	Thale cress	cytosol	58.57	62.12
CDY49364	Canola	cytosol	59.05	62.0
Bra035531.1-P	Field mustard	cytosol	59.05	62.0
CDX84118	Canola	cytosol	58.57	61.5
CDY06456	Canola	cytosol	56.67	61.34
CDX74645	Canola	cytosol	60.48	55.7
Zm00001d041682_P001	Maize	cytosol, extracellular	45.24	43.58
Zm00001d041973_P001	Maize	cytosol	44.76	42.73
Zm00001d028515_P001	Maize	cytosol	31.9	29.26

Protein Annotations

MapMan:17.4.2.4.1	Gene3D:3.30.760.10	UniProt:B6T1D2	EMBL:BT063782	EMBL:EU958797	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023398	ProteinID:ONM06034.1
PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF12	SUPFAM:SSF55418	InterPro:TIF_eIF4e-like
InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI000182CBB9	EnsemblPlantsGene:Zm00001d032775	EnsemblPlants:Zm00001d032775_P002	EnsemblPlants:Zm00001d032775_T002
SEG:seg	:	:	:	:	:

Description

Eukaryotic translation initiation factor isoform 4E

Coordinates

chr1:+:237880513..237886237

Molecular Weight (calculated)

23524.6 Da

IEP (calculated)

6.362

GRAVY (calculated)

-0.537

Length

210 amino acids

Sequence
(BLAST)

001: MAEVEAPAAA VAAATPEVAT VTEGGAATEA KGPHKLHRQW TFWYDIQSKP KPGAAWGTSL KKAYTFDTVE EFWGLYDHVF RPSKLPGTAD FHLFKAGVEP
101: KWEDPECANG GKWTVPCNRK PTFETMWLET LMALVGEQFD ETDDICGIVA SVRPRGDKLA LWTRTASNEA VQVNIGKKWK DVIDYNDKII YTFHDDSRRD
201: KPSRGGRYTV

Best Arabidopsis Sequence Match ( AT5G35620.3 )
(BLAST)

001: MATDDVNEPL PAAAELPATE AEKQPHKLER KWSFWFDNQS KKGAAWGASL RKAYTFDTVE DFWGLHETIF QTSKLTANAE IHLFKAGVEP KWEDPECANG
101: GKWTWVVTAN RKEALDKGWL ETLMALIGEQ FDEADEICGV VASVRPQSKQ DKLSLWTRTK SNEAVLMGIG KKWKEILDVT DKITFNNHDD SRRSRFTV

Arabidopsis Description

EIF(ISO)4ELSP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UEE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.