CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67920
CDX79416
CDX81852
CDX83885
CDX91565
CDX96745
CDY02774
CDY04196
CDY07407
CDY07408
CDY07409
CDY16339
CDY19183
CDY21729
CDY26207
CDY32742
CDY61034
CDY61036
CDY61880
CDY61881
CDY61882
CDY70245
CDY70606
CDY70843
CDY72550

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35620.1	CDX81852	AT1G17880.1	15716105
AT5G35620.1	CDX83885	AT1G17880.1	15716105
AT5G35620.1	CDX96745	AT1G17880.1	15716105
AT5G35620.1	CDY19183	AT1G17880.1	15716105
AT5G35620.1	CDY21729	AT1G17880.1	15716105
AT5G35620.1	CDY26207	AT1G17880.1	15716105
AT5G35620.1	CDX67920	AT3G45140.1	11117257
AT5G35620.1	CDX79416	AT3G45140.1	11117257
AT5G35620.1	CDX91565	AT3G45140.1	11117257
AT5G35620.1	CDY04196	AT3G45140.1	11117257
AT5G35620.1	CDY07407	AT3G45140.1	11117257
AT5G35620.1	CDY07408	AT3G45140.1	11117257
AT5G35620.1	CDY07409	AT3G45140.1	11117257
AT5G35620.1	CDY16339	AT3G45140.1	11117257
AT5G35620.1	CDY61034	AT3G45140.1	11117257
AT5G35620.1	CDY61036	AT3G45140.1	11117257
AT5G35620.1	CDY61880	AT3G45140.1	11117257
AT5G35620.1	CDY61881	AT3G45140.1	11117257
AT5G35620.1	CDY61882	AT3G45140.1	11117257
AT5G35620.1	CDY70245	AT3G45140.1	11117257
AT5G35620.1	CDY70606	AT3G45140.1	11117257
AT5G35620.1	CDY70843	AT3G45140.1	11117257
AT5G35620.1	CDY72550	AT3G45140.1	11117257
AT5G35620.1	CDY02774	AT5G57870.1	21798944
AT5G35620.1	CDY32742	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035393.1-P	Field mustard	cytosol	86.84	99.5
CDY33686	Canola	cytosol	83.77	95.98
CDY38545	Canola	cytosol	78.51	90.4
AT5G35620.1	Thale cress	cytosol	74.12	85.35
CDY06456	Canola	cytosol	69.3	81.44
CDY49364	Canola	cytosol	71.05	81.0
CDX84118	Canola	cytosol	69.74	79.5
Solyc09g090580.2.1	Tomato	nucleus	60.53	69.0
PGSC0003DMT400044186	Potato	cytosol	58.33	66.5
GSMUA_Achr4P25000_001	Banana	cytosol	54.82	65.1
VIT_05s0049g01770.t01	Wine grape	cytosol	57.89	64.71
Zm00001d032775_P002	Maize	cytosol, extracellular	55.7	60.48
KRG90357	Soybean	endoplasmic reticulum	52.63	60.0
Os10t0467600-01	Rice	cytosol, plastid	53.95	59.71
EER94108	Sorghum	cytosol	54.82	59.52
KRH33614	Soybean	cytosol	53.07	59.02
TraesCS1B01G167100.1	Wheat	cytosol	53.95	58.85
TraesCS1D01G146500.1	Wheat	golgi	53.07	57.89
HORVU1Hr1G039260.2	Barley	cytosol	53.07	57.62
Zm00001d014065_P001	Maize	cytosol, extracellular	53.95	56.94
GSMUA_Achr5P12940_001	Banana	cytosol	52.19	56.94
TraesCS1A01G149200.1	Wheat	cytosol	53.07	56.81
CDX90426	Canola	cytosol	17.98	44.57
CDY01513	Canola	extracellular	17.98	43.16
CDX78824	Canola	cytosol	36.84	36.84
CDY61674	Canola	cytosol	36.84	36.84
CDX76547	Canola	cytosol	37.28	36.32
CDY08883	Canola	cytosol	36.4	35.47
CDY44305	Canola	cytosol	35.53	33.2
CDX99836	Canola	cytosol	35.53	32.66
CDX94676	Canola	cytosol	34.65	32.11
CDY48345	Canola	cytosol	33.33	30.65
CDY38487	Canola	cytosol	23.68	25.23
CDX78777	Canola	cytosol	23.68	24.77
CDX70795	Canola	cytosol	23.25	24.31
CDY53257	Canola	cytosol	22.81	23.21
CDY49143	Canola	cytosol	22.81	23.21
CDY45630	Canola	cytosol	22.81	23.21
CDY02645	Canola	cytosol	22.81	23.21

Protein Annotations

Gene3D:3.30.760.10	MapMan:35.1	GO:A0A078CCX9	EnsemblPlants:CDX74645	ProteinID:CDX74645	ProteinID:CDX74645.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00114640001
InterPro:IPR023398	PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF12	SUPFAM:SSF55418
InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI0004EF344E	SEG:seg	:

Description

BnaA04g07440D

Coordinates

chrLK031801:+:2463396..2465449

Molecular Weight (calculated)

26020.8 Da

IEP (calculated)

7.514

GRAVY (calculated)

-0.548

Length

228 amino acids

Sequence
(BLAST)

001: MATEDVNEAL AAAEVPATET TEKQPADKLE RKWSFWFDNQ SKPKQGAAWG ASLRKAYTFD TVQDFWGLHE TIFIPSKLTP NAEIHMFKAG VEPKWEDPEC
101: ANGGKWTFVV TSNRKPALDK AWLETLMALV GEQFDEADDI QRNLTENPLS RLESFFLLLS SRPSRRLRIC GVVASVRPKQ DKLSLWTRTK SNEAVLMGIG
201: KKWKEILDVT DKITFTNHDD SRRTRFTV

Best Arabidopsis Sequence Match ( AT1G29550.1 )
(BLAST)

001: MVVTDSPVSG IMADQNIDPN TTTSPSPKEK HVSAIKAISG DEKAPSKEKK NYASKKSTTV IQKSHCFQNS WTFWFDNPSS KSNQVIWGSS LRSLYTFGTI
101: EEFWSLYNNI HPPTKWVSGA DLYCFKDKIE PKWEDPICAN GGKWSMMFPK ATLECNWLNT LLALVGEQFD QGDEICGAVL NFRARGDRIS LWTKNAANEE
201: AQLSIGKQWK ELLGYNETIG FIVHEDAKTL DRDAKRRYTV

Arabidopsis Description

EIF4E3Eukaryotic translation initiation factor 4E-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7P6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.