CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74645
CDX84118
CDY06456
CDY33686
CDY38545
CDY49364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17880.1	CDX74645	AT5G35620.1	15716105
AT1G17880.1	CDX84118	AT5G35620.1	15716105
AT1G17880.1	CDY06456	AT5G35620.1	15716105
AT1G17880.1	CDY33686	AT5G35620.1	15716105
AT1G17880.1	CDY38545	AT5G35620.1	15716105
AT1G17880.1	CDY49364	AT5G35620.1	15716105

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	88.96	92.95
CDX83885	Canola	mitochondrion	88.34	87.27
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	87.73	86.14
AT1G17880.1	Thale cress	mitochondrion	85.28	84.24
CDY19183	Canola	mitochondrion	90.18	83.05
KRH24412	Soybean	endoplasmic reticulum	79.14	80.12
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	78.53	80.0
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	79.14	79.63
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	80.37	79.39
KRH29395	Soybean	cytosol	77.91	78.4
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	79.75	78.31
Solyc07g008720.2.1	Tomato	nucleus	77.3	77.78
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	79.14	77.71
PGSC0003DMT400073918	Potato	cytosol	73.01	77.27
PGSC0003DMT400022830	Potato	cytosol	73.01	77.27
GSMUA_Achr6P08310_001	Banana	cytosol	74.85	77.22
Solyc09g010330.2.1	Tomato	nucleus	76.69	77.16
KRH75358	Soybean	endoplasmic reticulum	74.85	76.73
GSMUA_Achr3P18580_001	Banana	cytosol	73.01	75.32
Zm00001d013999_P001	Maize	plastid	74.23	73.33
Zm00001d032668_P001	Maize	plastid	73.62	72.73
EER91468	Sorghum	cytosol	73.62	72.29
TraesCS1D01G156700.1	Wheat	cytosol	73.01	71.26
Zm00001d048526_P001	Maize	extracellular	68.71	68.71
TraesCS1B01G175700.1	Wheat	mitochondrion	73.62	68.57
EER93008	Sorghum	cytosol	69.94	68.26
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	73.01	68.0
TraesCS5A01G550800.1	Wheat	cytosol	72.39	66.67
TraesCSU01G127100.1	Wheat	cytosol	72.39	66.67
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	68.71	66.27
Os03t0109600-01	Rice	plasma membrane	70.55	65.71
GSMUA_Achr6P16240_001	Banana	golgi, vacuole	73.62	64.17
TraesCS4B01G385900.2	Wheat	plastid	73.01	62.3
GSMUA_AchrUn_...	Banana	plastid	73.62	62.18
CDY11119	Canola	mitochondrion	80.98	60.27
CDX82088	Canola	mitochondrion	79.14	60.0
GSMUA_Achr10P...	Banana	plastid	72.39	57.56
HORVU4Hr1G090110.2	Barley	plastid	73.01	56.67
CDY65091	Canola	mitochondrion	79.14	56.09
Solyc06g050640.1.1	Tomato	mitochondrion	19.63	46.38
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	73.62	44.44
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	88.96	36.52

Protein Annotations

EnsemblPlants:CDX81852	EnsemblPlantsGene:GSBRNA2T00136798001	Gene3D:2.20.70.30	GO:A0A078CYE2	InterPro:IPR002715	InterPro:IPR038187
InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PANTHER:PTHR10351	PANTHER:PTHR10351:SF47	PFAM:PF01849	PFscan:PS51151
ProteinID:CDX81852	ProteinID:CDX81852.1	SEG:seg	SMART:SM01407	UniParc:UPI0004EE37E6	MapMan:19.1.2.1.2

Description

BnaC08g37490D

Coordinates

chrLK031826:-:1110951..1112909

Molecular Weight (calculated)

17764.0 Da

IEP (calculated)

7.542

GRAVY (calculated)

-0.617

Length

163 amino acids

Sequence
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKKLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFTN PKVQASVAAN TWVVSGSPQT KKLEDILPQI
101: LSQLGPDNMD NLRKLAEQFK KQAPTEGNAS ATVQEDDDDD VPDLVAGETF EAAAEEKVAA ASS

Best Arabidopsis Sequence Match ( AT1G17880.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS

Arabidopsis Description

BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.