CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	95.18	95.18
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	83.13	83.64
AT1G73230.1	Thale cress	mitochondrion	81.93	82.42
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	80.12	80.12
KRH24412	Soybean	endoplasmic reticulum	77.11	79.5
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	77.71	79.14
KRH29395	Soybean	cytosol	77.11	79.01
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	77.11	79.01
Solyc07g008720.2.1	Tomato	nucleus	76.51	78.4
PGSC0003DMT400022830	Potato	cytosol	72.29	77.92
PGSC0003DMT400073918	Potato	cytosol	72.29	77.92
CDX83885	Canola	mitochondrion	77.11	77.58
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	72.89	77.56
GSMUA_Achr6P08310_001	Banana	cytosol	73.49	77.22
KRH75358	Soybean	endoplasmic reticulum	73.49	76.73
Solyc09g010330.2.1	Tomato	nucleus	74.1	75.93
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	72.89	75.62
CDY19183	Canola	mitochondrion	78.92	74.01
Zm00001d013999_P001	Maize	plastid	72.89	73.33
GSMUA_Achr3P18580_001	Banana	cytosol	69.28	72.78
Zm00001d032668_P001	Maize	plastid	72.29	72.73
TraesCS1D01G156700.1	Wheat	cytosol	72.89	72.46
EER91468	Sorghum	cytosol	72.29	72.29
Zm00001d048526_P001	Maize	extracellular	68.67	69.94
TraesCS1B01G175700.1	Wheat	mitochondrion	73.49	69.71
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	73.49	69.71
EER93008	Sorghum	cytosol	69.88	69.46
TraesCSU01G127100.1	Wheat	cytosol	73.49	68.93
TraesCS5A01G550800.1	Wheat	cytosol	73.49	68.93
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	69.28	68.05
Os03t0109600-01	Rice	plasma membrane	71.69	68.0
CDY11119	Canola	mitochondrion	87.35	66.21
TraesCS4B01G385900.2	Wheat	plastid	74.1	64.4
GSMUA_Achr6P16240_001	Banana	golgi, vacuole	71.69	63.64
CDX82088	Canola	mitochondrion	81.33	62.79
GSMUA_AchrUn_...	Banana	plastid	71.69	61.66
CDY65091	Canola	mitochondrion	84.94	61.3
HORVU4Hr1G090110.2	Barley	plastid	73.49	58.1
GSMUA_Achr10P...	Banana	plastid	70.48	57.07
Solyc06g050640.1.1	Tomato	mitochondrion	22.89	55.07
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	73.49	45.19
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	76.51	31.99

Protein Annotations

EnsemblPlants:CDX72966	EnsemblPlantsGene:GSBRNA2T00103394001	Gene3D:2.20.70.30	GO:A0A078C785	InterPro:IPR002715	InterPro:IPR038187
InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PANTHER:PTHR10351	PANTHER:PTHR10351:SF47	PFAM:PF01849	PFscan:PS51151
ProteinID:CDX72966	ProteinID:CDX72966.1	SEG:seg	SMART:SM01407	UniParc:UPI0001B63905	MapMan:19.1.2.1.2

Description

BnaC06g34140D

Coordinates

chrLK031797:-:1399852..1401354

Molecular Weight (calculated)

18096.5 Da

IEP (calculated)

7.541

GRAVY (calculated)

-0.643

Length

166 amino acids

Sequence
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKKLQ STLKRVGVNS IPGIEELNIF KDDVVIQFIN PKVQASIAAN TWAVSGTPQT KKLQDILPQI
101: ISQLGTDNLE NLKKLAEQFQ KQTPGGADIP ATIQEEDDDD VPELVGGETF ETPASEEAAQ PKATAS

Best Arabidopsis Sequence Match ( AT1G73230.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TTTTDDKRLQ STLKRVGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGTPQT KKLQDILPQI
101: ISQLGPDNLD NLKKLAEQFQ KQAPGAGDVP ATIQEEDDDD DVPDLVVGET FETPATEEAP KAAAS

Arabidopsis Description

Nascent polypeptide-associated complex subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q9CAT7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.