CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003851.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	93.94	94.51
AT1G73230.1	Thale cress	mitochondrion	84.85	84.85
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	83.64	83.13
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	83.03	82.53
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	79.39	80.37
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	74.55	78.85
CDX83885	Canola	mitochondrion	78.79	78.79
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	76.36	78.75
PGSC0003DMT400022830	Potato	cytosol	73.33	78.57
KRH24412	Soybean	endoplasmic reticulum	76.36	78.26
PGSC0003DMT400073918	Potato	cytosol	72.73	77.92
KRH29395	Soybean	cytosol	76.36	77.78
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	76.36	77.78
Solyc09g010330.2.1	Tomato	nucleus	76.36	77.78
Solyc07g008720.2.1	Tomato	nucleus	76.36	77.78
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	77.58	77.11
KRH75358	Soybean	endoplasmic reticulum	71.52	74.21
GSMUA_Achr6P08310_001	Banana	cytosol	70.91	74.05
Zm00001d013999_P001	Maize	plastid	73.94	73.94
Zm00001d032668_P001	Maize	plastid	73.33	73.33
CDY19183	Canola	mitochondrion	77.58	72.32
TraesCS1D01G156700.1	Wheat	cytosol	72.73	71.86
EER91468	Sorghum	cytosol	72.12	71.69
GSMUA_Achr3P18580_001	Banana	cytosol	67.88	70.89
Zm00001d048526_P001	Maize	extracellular	69.7	70.55
TraesCSU01G127100.1	Wheat	cytosol	75.15	70.06
TraesCS5A01G550800.1	Wheat	cytosol	75.15	70.06
EER93008	Sorghum	cytosol	70.3	69.46
CDX82088	Canola	mitochondrion	90.3	69.3
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	73.33	69.14
TraesCS1B01G175700.1	Wheat	mitochondrion	73.33	69.14
Os03t0109600-01	Rice	plasma membrane	72.12	68.0
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	69.09	67.46
TraesCS4B01G385900.2	Wheat	plastid	75.76	65.44
CDY11119	Canola	mitochondrion	86.67	65.3
CDY65091	Canola	mitochondrion	86.67	62.17
GSMUA_Achr6P16240_001	Banana	golgi, vacuole	70.3	62.03
GSMUA_AchrUn_...	Banana	plastid	71.52	61.14
GSMUA_Achr10P...	Banana	plastid	73.33	59.02
HORVU4Hr1G090110.2	Barley	plastid	74.55	58.57
Solyc06g050640.1.1	Tomato	mitochondrion	21.21	50.72
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	73.33	44.81
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	78.18	32.49

Protein Annotations

EnsemblPlants:CDX68236	EnsemblPlantsGene:GSBRNA2T00099512001	Gene3D:2.20.70.30	GO:A0A078BTV8	InterPro:IPR002715	InterPro:IPR038187
InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PANTHER:PTHR10351	PANTHER:PTHR10351:SF47	PFAM:PF01849	PFscan:PS51151
ProteinID:CDX68236	ProteinID:CDX68236.1	SEG:seg	SMART:SM01407	UniParc:UPI0004EE6D4C	MapMan:19.1.2.1.2

Description

BnaA07g22760D

Coordinates

chrLK031787:+:4561360..4563096

Molecular Weight (calculated)

17823.2 Da

IEP (calculated)

9.005

GRAVY (calculated)

-0.561

Length

165 amino acids

Sequence
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKKLQ STLKRVGVNS IPGIEEVNIF KDDVVIQFIN PKVQASVAAN TWAVSGAPQT KKLQDILPQI
101: ISQLGTDNLD NLKKLAEQFQ KQAPGGGADV PATIQEEDED DVPELVAGET FETPAAQEAA KATAS

Best Arabidopsis Sequence Match ( AT1G73230.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TTTTDDKRLQ STLKRVGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGTPQT KKLQDILPQI
101: ISQLGPDNLD NLKKLAEQFQ KQAPGAGDVP ATIQEEDDDD DVPDLVVGET FETPATEEAP KAAAS

Arabidopsis Description

Nascent polypeptide-associated complex subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q9CAT7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.