Factsheet for VIT_17s0053g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0049g01770.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17880.1	VIT_05s0049g01770.t01	AT5G35620.1	15716105

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022830	Potato	cytosol	81.88	85.06
PGSC0003DMT400073918	Potato	cytosol	81.25	84.42
Solyc09g010330.2.1	Tomato	nucleus	85.0	83.95
Solyc07g008720.2.1	Tomato	nucleus	85.0	83.95
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	84.38	83.33
KRH29395	Soybean	cytosol	83.75	82.72
KRH24412	Soybean	endoplasmic reticulum	83.12	82.61
KRH75358	Soybean	endoplasmic reticulum	81.88	82.39
GSMUA_Achr3P18580_001	Banana	cytosol	81.25	82.28
Zm00001d032668_P001	Maize	plastid	84.38	81.82
GSMUA_Achr6P08310_001	Banana	cytosol	80.62	81.65
EER91468	Sorghum	cytosol	83.12	80.12
Zm00001d013999_P001	Maize	plastid	82.5	80.0
TraesCS1D01G156700.1	Wheat	cytosol	82.5	79.04
AT1G73230.1	Thale cress	mitochondrion	81.25	78.79
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	80.0	78.53
AT1G17880.1	Thale cress	mitochondrion	80.62	78.18
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	75.62	77.56
Bra031007.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	75.62	77.56
Zm00001d048526_P001	Maize	extracellular	78.75	77.3
TraesCS1B01G175700.1	Wheat	mitochondrion	83.75	76.57
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	83.75	76.57
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	79.38	76.51
Bra025940.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	79.38	76.51
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	78.75	76.36
Bra003851.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	78.12	76.22
EER93008	Sorghum	cytosol	78.75	75.45
Bra008086.1-P	Field mustard	mitochondrion	77.5	74.25
Os03t0109600-01	Rice	plasma membrane	80.62	73.71
TraesCSU01G127100.1	Wheat	cytosol	81.25	73.45
TraesCS5A01G550800.1	Wheat	cytosol	81.25	73.45
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	77.5	73.37
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	75.62	72.89
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	75.62	72.89
Bra016010.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	75.62	72.89
CDY19183	Canola	mitochondrion	80.62	72.88
CDX83885	Canola	mitochondrion	75.0	72.73
GSMUA_Achr6P16240_001	Banana	golgi, vacuole	81.88	70.05
GSMUA_AchrUn_...	Banana	plastid	83.75	69.43
TraesCS4B01G385900.2	Wheat	plastid	81.88	68.59
GSMUA_Achr10P...	Banana	plastid	84.38	65.85
HORVU4Hr1G090110.2	Barley	plastid	81.25	61.9
CDX82088	Canola	mitochondrion	76.88	57.21
CDY11119	Canola	mitochondrion	76.88	56.16
CDY65091	Canola	mitochondrion	78.12	54.35
Solyc06g050640.1.1	Tomato	mitochondrion	23.12	53.62
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	83.75	49.63
Bra016579.1-P	Field mustard	cytosol	76.25	36.2
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	75.62	30.48

Protein Annotations

EntrezGene:100242819	wikigene:100242819	MapMan:19.1.2.1.2	Gene3D:2.20.70.30	ProteinID:CBI35291	ProteinID:CBI35291.3
UniProt:D7TXR6	EMBL:FN596258	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR002715	InterPro:IPR038187	EntrezGene:LOC100242819
wikigene:LOC100242819	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	PFscan:PS51151	PANTHER:PTHR10351
PANTHER:PTHR10351:SF47	SMART:SM01407	TIGR:TC52222	TIGR:TC71007	UniParc:UPI00019852AB	ArrayExpress:VIT_17s0053g00620
EnsemblPlantsGene:VIT_17s0053g00620	EnsemblPlants:VIT_17s0053g00620.t01	RefSeq:XP_002265041	RefSeq:XP_002265041.1	RefSeq:XP_010663926.1	SEG:seg

Description

Nascent polypeptide-associated complex subunit beta [Source:UniProtKB/TrEMBL;Acc:D7TXR6]

Coordinates

chr17:-:15635286..15638594

Molecular Weight (calculated)

17174.5 Da

IEP (calculated)

9.053

GRAVY (calculated)

-0.497

Length

160 amino acids

Sequence
(BLAST)

001: MNREKLMKMA GAVRTGGKGS MRRKKKAVHK TTTTDDKRLQ STLKRIGVNA IPAIEEVNIF KDDVVIQFLN PKVQASIAAN TWVVSGSPQT KKLQDILPGI
101: INQLGPDNLD NLRKLAEQFQ KQAPGAGAGA AAAQDDDDDE VPDLVAGQTF EAAAEEGHTA

Best Arabidopsis Sequence Match ( AT1G17880.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS

Arabidopsis Description

BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.