Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
extracellular: 29876421 |
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc09g090580.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17880.1 | Solyc09g090580.2.1 | AT5G35620.1 | 15716105 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400022830 | Potato | cytosol | 87.04 | 91.56 |
| Solyc07g008720.2.1 | Tomato | nucleus | 91.36 | 91.36 |
| KRH29394 | Soybean | cytosol, mitochondrion, nucleus, plastid | 85.19 | 85.19 |
| VIT_17s0053g00620.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 83.95 | 85.0 |
| KRH24412 | Soybean | endoplasmic reticulum | 83.95 | 84.47 |
| KRH75358 | Soybean | endoplasmic reticulum | 82.1 | 83.65 |
| GSMUA_Achr6P08310_001 | Banana | cytosol | 81.48 | 83.54 |
| KRH29395 | Soybean | cytosol | 83.33 | 83.33 |
| Zm00001d032668_P001 | Maize | plastid | 82.72 | 81.21 |
| AT1G73230.1 | Thale cress | mitochondrion | 81.48 | 80.0 |
| GSMUA_Achr3P18580_001 | Banana | cytosol | 77.78 | 79.75 |
| Zm00001d013999_P001 | Maize | plastid | 80.86 | 79.39 |
| EER91468 | Sorghum | cytosol | 80.86 | 78.92 |
| AT1G17880.1 | Thale cress | mitochondrion | 79.63 | 78.18 |
| TraesCS1D01G156700.1 | Wheat | cytosol | 79.63 | 77.25 |
| CDX81852 | Canola | cytosol, mitochondrion, nucleus, plastid | 77.16 | 76.69 |
| CDX68236 | Canola | cytosol, mitochondrion, nucleus, plastid | 77.78 | 76.36 |
| Zm00001d048526_P001 | Maize | extracellular | 76.54 | 76.07 |
| EER93008 | Sorghum | cytosol | 78.4 | 76.05 |
| Bra008086.1-P | Field mustard | mitochondrion | 78.4 | 76.05 |
| CDY21729 | Canola | cytosol, mitochondrion, nucleus, plastid | 72.84 | 75.64 |
| Bra031007.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 72.84 | 75.64 |
| Bra003851.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 76.54 | 75.61 |
| Bra016010.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 77.16 | 75.3 |
| CDX96457 | Canola | cytosol, mitochondrion, nucleus, plastid | 77.16 | 75.3 |
| Zm00001d027318_P001 | Maize | extracellular, mitochondrion, plastid | 78.4 | 75.15 |
| TraesCS1B01G175700.1 | Wheat | mitochondrion | 80.86 | 74.86 |
| TraesCS1A01G159300.1 | Wheat | cytosol, nucleus, plastid | 80.86 | 74.86 |
| CDY26207 | Canola | cytosol, mitochondrion, nucleus, plastid | 76.54 | 74.7 |
| Bra025940.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 76.54 | 74.7 |
| CDX83885 | Canola | mitochondrion | 75.93 | 74.55 |
| CDX72966 | Canola | cytosol, mitochondrion, nucleus, plastid | 75.93 | 74.1 |
| Os03t0109600-01 | Rice | plasma membrane | 79.01 | 73.14 |
| TraesCSU01G127100.1 | Wheat | cytosol | 78.4 | 71.75 |
| TraesCS5A01G550800.1 | Wheat | cytosol | 78.4 | 71.75 |
| CDY19183 | Canola | mitochondrion | 76.54 | 70.06 |
| GSMUA_Achr6P16240_001 | Banana | golgi, vacuole | 80.25 | 69.52 |
| GSMUA_AchrUn_... | Banana | plastid | 81.48 | 68.39 |
| TraesCS4B01G385900.2 | Wheat | plastid | 79.01 | 67.02 |
| GSMUA_Achr10P... | Banana | plastid | 80.25 | 63.41 |
| HORVU4Hr1G090110.2 | Barley | plastid | 79.01 | 60.95 |
| CDX82088 | Canola | mitochondrion | 80.25 | 60.47 |
| CDY11119 | Canola | mitochondrion | 77.16 | 57.08 |
| Solyc06g050640.1.1 | Tomato | mitochondrion | 24.07 | 56.52 |
| CDY65091 | Canola | mitochondrion | 79.63 | 56.09 |
| HORVU1Hr1G042270.1 | Barley | nucleus, peroxisome, plastid | 80.86 | 48.52 |
| Bra016579.1-P | Field mustard | cytosol | 77.16 | 37.09 |
| CDX96745 | Canola | cytosol, golgi, mitochondrion, plastid | 76.54 | 31.23 |
Protein Annotations
| EnsemblPlants:Solyc09g010330.2.1 | EnsemblPlantsGene:Solyc09g010330.2 | Gene3D:2.20.70.30 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR002715 | InterPro:IPR038187 |
| InterPro:NAC_A/B_dom_sf | InterPro:Nas_poly-pep-assoc_cplx_dom | PANTHER:PTHR10351 | PANTHER:PTHR10351:SF47 | PFAM:PF01849 | PFscan:PS51151 |
| SEG:seg | SMART:SM01407 | UniParc:UPI000276CAFD | UniProt:K4CR60 | MapMan:19.1.2.1.2 | : |
Description
Nascent polypeptide-associated complex subunit beta [Source:UniProtKB/TrEMBL;Acc:K4CR60]
Coordinates
chr9:-:3715630..3718303
Molecular Weight (calculated)
17469.8 Da
IEP (calculated)
6.813
GRAVY (calculated)
-0.478
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MNVEKLQKMA GSVRTGGKGT MRRKKKAVHK TTTTDDKRLQ STLKRIGVNA IPAIEEVNIF KEDVVIQFSN PKVQASIAAN TWVVSGTPQT KKLQDILPQI
101: IHQLGPDNLE NLKKLAEQFQ KQAPGAADVA AGAVAAQEDD DDVPELVAGE TFEAAAEEGH TS
101: IHQLGPDNLE NLKKLAEQFQ KQAPGAADVA AGAVAAQEDD DDVPELVAGE TFEAAAEEGH TS
001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
Arabidopsis Description
BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.