CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74645
CDX84118
CDY06456
CDY33686
CDY38545
CDY49364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17880.1	CDX74645	AT5G35620.1	15716105
AT1G17880.1	CDX84118	AT5G35620.1	15716105
AT1G17880.1	CDY06456	AT5G35620.1	15716105
AT1G17880.1	CDY33686	AT5G35620.1	15716105
AT1G17880.1	CDY38545	AT5G35620.1	15716105
AT1G17880.1	CDY49364	AT5G35620.1	15716105

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031007.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	100.0	100.0
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	92.95	88.96
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	89.74	84.34
CDY19183	Canola	mitochondrion	92.31	81.36
AT1G17880.1	Thale cress	mitochondrion	85.9	81.21
CDX83885	Canola	mitochondrion	85.9	81.21
PGSC0003DMT400022830	Potato	cytosol	76.28	77.27
PGSC0003DMT400073918	Potato	cytosol	76.28	77.27
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	77.56	75.62
KRH75358	Soybean	endoplasmic reticulum	76.28	74.84
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	78.85	74.55
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	78.85	74.1
Solyc07g008720.2.1	Tomato	nucleus	76.92	74.07
KRH29395	Soybean	cytosol	76.92	74.07
KRH24412	Soybean	endoplasmic reticulum	76.28	73.91
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	76.28	73.46
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	77.56	72.89
Solyc09g010330.2.1	Tomato	nucleus	75.64	72.84
GSMUA_Achr6P08310_001	Banana	cytosol	73.72	72.78
Zm00001d013999_P001	Maize	plastid	75.64	71.52
Zm00001d032668_P001	Maize	plastid	75.0	70.91
GSMUA_Achr3P18580_001	Banana	cytosol	71.79	70.89
EER91468	Sorghum	cytosol	75.0	70.48
TraesCS1D01G156700.1	Wheat	cytosol	73.08	68.26
Zm00001d048526_P001	Maize	extracellular	69.87	66.87
TraesCS1B01G175700.1	Wheat	mitochondrion	74.36	66.29
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	73.72	65.71
TraesCSU01G127100.1	Wheat	cytosol	74.36	65.54
TraesCS5A01G550800.1	Wheat	cytosol	74.36	65.54
EER93008	Sorghum	cytosol	69.87	65.27
Os03t0109600-01	Rice	plasma membrane	72.44	64.57
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	69.23	63.91
TraesCS4B01G385900.2	Wheat	plastid	75.0	61.26
GSMUA_Achr6P16240_001	Banana	golgi, vacuole	73.08	60.96
GSMUA_AchrUn_...	Banana	plastid	73.72	59.59
CDY11119	Canola	mitochondrion	80.13	57.08
CDX82088	Canola	mitochondrion	77.56	56.28
HORVU4Hr1G090110.2	Barley	plastid	75.0	55.71
GSMUA_Achr10P...	Banana	plastid	71.15	54.15
CDY65091	Canola	mitochondrion	78.21	53.04
Solyc06g050640.1.1	Tomato	mitochondrion	19.87	44.93
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	74.36	42.96
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	86.54	34.01

Protein Annotations

MapMan:19.1.2.1.2	Gene3D:2.20.70.30	GO:A0A078G8K2	UniProt:A0A078G8K2	EnsemblPlants:CDY21729	ProteinID:CDY21729
ProteinID:CDY21729.1	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00016230001	InterPro:IPR002715	InterPro:IPR038187	InterPro:NAC_A/B_dom_sf
InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	PFscan:PS51151	PANTHER:PTHR10351	PANTHER:PTHR10351:SF47	SMART:SM01407
UniParc:UPI0002542AE6	SEG:seg	:	:	:	:

Description

BnaA09g44800DNascent polypeptide-associated complex subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078G8K2]

Coordinates

chrLK032123:+:407920..409808

Molecular Weight (calculated)

16773.7 Da

IEP (calculated)

5.010

GRAVY (calculated)

-0.524

Length

156 amino acids

Sequence
(BLAST)

001: MANTVRTGGK GTVRRKKKAV HKTNTTDDKK LQSTLKRIGV NSIPAIEEVN IFKDDVVIQF TNPKVQASVA ANTWVVSGSP QTKKLEDILP QILSQLGPDN
101: MDNLRKLAEQ FKNQAPVDGN ASATVQEDDD DDVPDLVAGE TFEAAAEEKV AAAASS

Best Arabidopsis Sequence Match ( AT1G17880.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS

Arabidopsis Description

BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.