Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G149200.1 | |
| TraesCS1B01G167100.1 | |
| TraesCS1D01G146500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17880.1 | TraesCS1A01G149200.1 | AT5G35620.1 | 15716105 |
| AT1G17880.1 | TraesCS1B01G167100.1 | AT5G35620.1 | 15716105 |
| AT1G17880.1 | TraesCS1D01G146500.1 | AT5G35620.1 | 15716105 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G156700.1 | Wheat | cytosol | 92.57 | 97.01 |
| Zm00001d032668_P001 | Maize | plastid | 89.71 | 95.15 |
| TraesCS1B01G175700.1 | Wheat | mitochondrion | 93.71 | 93.71 |
| EER91468 | Sorghum | cytosol | 88.57 | 93.37 |
| Zm00001d013999_P001 | Maize | plastid | 87.43 | 92.73 |
| VIT_17s0053g00620.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 76.57 | 83.75 |
| TraesCS5A01G550800.1 | Wheat | cytosol | 84.57 | 83.62 |
| KRH75358 | Soybean | endoplasmic reticulum | 73.71 | 81.13 |
| Solyc09g010330.2.1 | Tomato | nucleus | 74.86 | 80.86 |
| Solyc07g008720.2.1 | Tomato | nucleus | 74.86 | 80.86 |
| KRH29394 | Soybean | cytosol, mitochondrion, nucleus, plastid | 74.86 | 80.86 |
| KRH29395 | Soybean | cytosol | 74.29 | 80.25 |
| KRH24412 | Soybean | endoplasmic reticulum | 73.71 | 80.12 |
| PGSC0003DMT400022830 | Potato | cytosol | 70.29 | 79.87 |
| TraesCS4A01G332100.1 | Wheat | golgi, unclear | 71.43 | 79.62 |
| PGSC0003DMT400073918 | Potato | cytosol | 69.71 | 79.22 |
| AT1G73230.1 | Thale cress | mitochondrion | 72.57 | 76.97 |
| Bra008086.1-P | Field mustard | mitochondrion | 72.0 | 75.45 |
| AT1G17880.1 | Thale cress | mitochondrion | 70.86 | 75.15 |
| Bra016010.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 70.86 | 74.7 |
| CDX96457 | Canola | cytosol, mitochondrion, nucleus, plastid | 70.86 | 74.7 |
| Bra003851.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 69.14 | 73.78 |
| CDY21729 | Canola | cytosol, mitochondrion, nucleus, plastid | 65.71 | 73.72 |
| Bra031007.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 65.71 | 73.72 |
| CDY26207 | Canola | cytosol, mitochondrion, nucleus, plastid | 69.71 | 73.49 |
| Bra025940.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 69.71 | 73.49 |
| CDX72966 | Canola | cytosol, mitochondrion, nucleus, plastid | 69.71 | 73.49 |
| CDX68236 | Canola | cytosol, mitochondrion, nucleus, plastid | 69.14 | 73.33 |
| CDX81852 | Canola | cytosol, mitochondrion, nucleus, plastid | 68.0 | 73.01 |
| CDX83885 | Canola | mitochondrion | 66.86 | 70.91 |
| CDY19183 | Canola | mitochondrion | 69.71 | 68.93 |
| GSMUA_Achr1P02000_001 | Banana | plastid | 76.57 | 62.04 |
| HORVU1Hr1G042270.1 | Barley | nucleus, peroxisome, plastid | 93.71 | 60.74 |
| CDX82088 | Canola | mitochondrion | 72.0 | 58.6 |
| CDY11119 | Canola | mitochondrion | 69.71 | 55.71 |
| CDY65091 | Canola | mitochondrion | 73.14 | 55.65 |
| Solyc06g050640.1.1 | Tomato | mitochondrion | 19.43 | 49.28 |
| Bra016579.1-P | Field mustard | cytosol | 68.0 | 35.31 |
| CDX96745 | Canola | cytosol, golgi, mitochondrion, plastid | 67.43 | 29.72 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G159300.1 | EnsemblPlantsGene:TraesCS1A01G159300 | Gene3D:2.20.70.30 | InterPro:IPR002715 | InterPro:IPR038187 | InterPro:NAC_A/B_dom_sf |
| InterPro:Nas_poly-pep-assoc_cplx_dom | PANTHER:PTHR10351 | PANTHER:PTHR10351:SF47 | PFAM:PF01849 | PFscan:PS51151 | SEG:seg |
| SMART:SM01407 | MapMan:19.1.2.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:284912392..284913728
Molecular Weight (calculated)
18937.6 Da
IEP (calculated)
8.956
GRAVY (calculated)
-0.440
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MNVEKLKKMA GAVRTGGKGS MRRKKKAVHK TTTTDDKRLQ STLKRVGVNT IPGIEEVNIF KDDVVIQFLN PKVQASIGAN TWVVSGTPQT KKLQDLLPSI
101: INQLGPDNLD NLRRLAEQFQ KQVPGGAAGI EAGASAGAAQ ADDDDDVPEL VPGETFEEAA EEKKWTGFVM YASFV
101: INQLGPDNLD NLRRLAEQFQ KQVPGGAAGI EAGASAGAAQ ADDDDDVPEL VPGETFEEAA EEKKWTGFVM YASFV
001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
Arabidopsis Description
BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.