Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26207 | Canola | cytosol, mitochondrion, nucleus, plastid | 87.57 | 93.37 |
| CDY21729 | Canola | cytosol, mitochondrion, nucleus, plastid | 81.36 | 92.31 |
| CDX81852 | Canola | cytosol, mitochondrion, nucleus, plastid | 83.05 | 90.18 |
| AT1G17880.1 | Thale cress | mitochondrion | 80.79 | 86.67 |
| CDX83885 | Canola | mitochondrion | 77.97 | 83.64 |
| VIT_17s0053g00620.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 72.88 | 80.62 |
| KRH24412 | Soybean | endoplasmic reticulum | 72.88 | 80.12 |
| CDX96457 | Canola | cytosol, mitochondrion, nucleus, plastid | 75.14 | 80.12 |
| KRH29394 | Soybean | cytosol, mitochondrion, nucleus, plastid | 72.88 | 79.63 |
| KRH29395 | Soybean | cytosol | 72.88 | 79.63 |
| CDX72966 | Canola | cytosol, mitochondrion, nucleus, plastid | 74.01 | 78.92 |
| PGSC0003DMT400022830 | Potato | cytosol | 68.36 | 78.57 |
| GSMUA_Achr6P08310_001 | Banana | cytosol | 70.06 | 78.48 |
| Solyc07g008720.2.1 | Tomato | nucleus | 71.75 | 78.4 |
| KRH75358 | Soybean | endoplasmic reticulum | 70.06 | 77.99 |
| PGSC0003DMT400073918 | Potato | cytosol | 67.8 | 77.92 |
| CDX68236 | Canola | cytosol, mitochondrion, nucleus, plastid | 72.32 | 77.58 |
| GSMUA_Achr3P18580_001 | Banana | cytosol | 68.36 | 76.58 |
| Solyc09g010330.2.1 | Tomato | nucleus | 70.06 | 76.54 |
| Zm00001d013999_P001 | Maize | plastid | 70.06 | 75.15 |
| Zm00001d032668_P001 | Maize | plastid | 69.49 | 74.55 |
| EER91468 | Sorghum | cytosol | 68.36 | 72.89 |
| TraesCS1D01G156700.1 | Wheat | cytosol | 68.36 | 72.46 |
| Zm00001d048526_P001 | Maize | extracellular | 65.54 | 71.17 |
| TraesCS1B01G175700.1 | Wheat | mitochondrion | 69.49 | 70.29 |
| TraesCS1A01G159300.1 | Wheat | cytosol, nucleus, plastid | 68.93 | 69.71 |
| TraesCSU01G127100.1 | Wheat | cytosol | 69.49 | 69.49 |
| TraesCS5A01G550800.1 | Wheat | cytosol | 69.49 | 69.49 |
| EER93008 | Sorghum | cytosol | 65.54 | 69.46 |
| Zm00001d027318_P001 | Maize | extracellular, mitochondrion, plastid | 65.54 | 68.64 |
| Os03t0109600-01 | Rice | plasma membrane | 67.8 | 68.57 |
| GSMUA_Achr6P16240_001 | Banana | golgi, vacuole | 70.06 | 66.31 |
| TraesCS4B01G385900.2 | Wheat | plastid | 70.06 | 64.92 |
| GSMUA_AchrUn_... | Banana | plastid | 69.49 | 63.73 |
| CDX82088 | Canola | mitochondrion | 72.32 | 59.53 |
| CDY11119 | Canola | mitochondrion | 73.45 | 59.36 |
| HORVU4Hr1G090110.2 | Barley | plastid | 70.06 | 59.05 |
| GSMUA_Achr10P... | Banana | plastid | 67.8 | 58.54 |
| CDY65091 | Canola | mitochondrion | 75.14 | 57.83 |
| Solyc06g050640.1.1 | Tomato | mitochondrion | 18.08 | 46.38 |
| HORVU1Hr1G042270.1 | Barley | nucleus, peroxisome, plastid | 69.49 | 45.56 |
| CDX96745 | Canola | cytosol, golgi, mitochondrion, plastid | 78.53 | 35.01 |
Protein Annotations
| MapMan:19.1.2.1.2 | Gene3D:2.20.70.30 | GO:A0A078G3C7 | UniProt:A0A078G3C7 | EnsemblPlants:CDY19183 | ProteinID:CDY19183 |
| ProteinID:CDY19183.1 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00006476001 | InterPro:IPR002715 | InterPro:IPR038187 | InterPro:NAC_A/B_dom_sf |
| InterPro:Nas_poly-pep-assoc_cplx_dom | PFAM:PF01849 | PFscan:PS51151 | PANTHER:PTHR10351 | PANTHER:PTHR10351:SF47 | SMART:SM01407 |
| UniParc:UPI0004EEB7CE | SEG:seg | : | : | : | : |
Description
BnaC05g13840DNascent polypeptide-associated complex subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078G3C7]
Coordinates
chrLK032093:-:42640..44255
Molecular Weight (calculated)
18967.6 Da
IEP (calculated)
7.694
GRAVY (calculated)
-0.520
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKKLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFTN PKVQASIAAN TWVVSGSPQT KKLEDILPQI
101: LSQLGPDNMD NLRKLAEQLK KQPPGEGHAS ATIQEEDDDD VPDLVAGETF EAAAAAAEEK VAAPAAEAKV AAPAASS
101: LSQLGPDNMD NLRKLAEQLK KQPPGEGHAS ATIQEEDDDD VPDLVAGETF EAAAAAAEEK VAAPAAEAKV AAPAASS
001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
Arabidopsis Description
BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.