Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P25000_001 | |
| GSMUA_Achr5P12940_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17880.1 | GSMUA_Achr4P25000_001 | AT5G35620.1 | 15716105 |
| AT1G17880.1 | GSMUA_Achr5P12940_001 | AT5G35620.1 | 15716105 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P08310_001 | Banana | cytosol | 86.71 | 86.71 |
| VIT_17s0053g00620.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 82.28 | 81.25 |
| Solyc07g008720.2.1 | Tomato | nucleus | 81.01 | 79.01 |
| KRH75358 | Soybean | endoplasmic reticulum | 78.48 | 77.99 |
| PGSC0003DMT400073918 | Potato | cytosol | 75.95 | 77.92 |
| Solyc09g010330.2.1 | Tomato | nucleus | 79.75 | 77.78 |
| KRH29394 | Soybean | cytosol, mitochondrion, nucleus, plastid | 79.75 | 77.78 |
| PGSC0003DMT400022830 | Potato | cytosol | 75.32 | 77.27 |
| KRH29395 | Soybean | cytosol | 79.11 | 77.16 |
| KRH24412 | Soybean | endoplasmic reticulum | 78.48 | 77.02 |
| GSMUA_Achr6P16240_001 | Banana | golgi, vacuole | 89.87 | 75.94 |
| AT1G73230.1 | Thale cress | mitochondrion | 77.22 | 73.94 |
| GSMUA_AchrUn_... | Banana | plastid | 89.24 | 73.06 |
| CDX81852 | Canola | cytosol, mitochondrion, nucleus, plastid | 75.32 | 73.01 |
| AT1G17880.1 | Thale cress | mitochondrion | 75.32 | 72.12 |
| CDY21729 | Canola | cytosol, mitochondrion, nucleus, plastid | 70.89 | 71.79 |
| Bra031007.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 70.89 | 71.79 |
| CDY26207 | Canola | cytosol, mitochondrion, nucleus, plastid | 75.32 | 71.69 |
| Bra025940.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 75.32 | 71.69 |
| CDX83885 | Canola | mitochondrion | 73.42 | 70.3 |
| Bra008086.1-P | Field mustard | mitochondrion | 74.05 | 70.06 |
| CDX72966 | Canola | cytosol, mitochondrion, nucleus, plastid | 72.78 | 69.28 |
| Bra016010.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 72.78 | 69.28 |
| CDX96457 | Canola | cytosol, mitochondrion, nucleus, plastid | 72.78 | 69.28 |
| Bra003851.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 71.52 | 68.9 |
| GSMUA_Achr10P... | Banana | plastid | 89.24 | 68.78 |
| CDY19183 | Canola | mitochondrion | 76.58 | 68.36 |
| CDX68236 | Canola | cytosol, mitochondrion, nucleus, plastid | 70.89 | 67.88 |
| GSMUA_Achr1P02000_001 | Banana | plastid | 83.54 | 61.11 |
| CDX82088 | Canola | mitochondrion | 72.15 | 53.02 |
| CDY11119 | Canola | mitochondrion | 72.15 | 52.05 |
| CDY65091 | Canola | mitochondrion | 75.32 | 51.74 |
| Solyc06g050640.1.1 | Tomato | mitochondrion | 22.15 | 50.72 |
| Bra016579.1-P | Field mustard | cytosol | 74.68 | 35.01 |
| CDX96745 | Canola | cytosol, golgi, mitochondrion, plastid | 74.05 | 29.47 |
Protein Annotations
| MapMan:19.1.2.1.2 | Gene3D:2.20.70.30 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr3G18580_001 | EnsemblPlants:GSMUA_Achr3P18580_001 | EnsemblPlants:GSMUA_Achr3T18580_001 |
| InterPro:IPR002715 | InterPro:IPR038187 | UniProt:M0SFS4 | InterPro:NAC_A/B_dom_sf | InterPro:Nas_poly-pep-assoc_cplx_dom | PFAM:PF01849 |
| PFscan:PS51151 | PANTHER:PTHR10351 | PANTHER:PTHR10351:SF47 | SMART:SM01407 | UniParc:UPI000295A74B | SEG:seg |
Description
Transcription factor BTF3 [Source:GMGC_GENE;Acc:GSMUA_Achr3G18580_001]
Coordinates
chr3:-:19998562..20000101
Molecular Weight (calculated)
17227.5 Da
IEP (calculated)
7.697
GRAVY (calculated)
-0.556
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MNVDKLMKMA GAVRTGGKGS MRRKKKAVHK TTTTDDKRLQ STLKRIGVNV IPAIEEVNIF KDDLVIQFVN PKVQASIAAN TWVVSGSPQT KKFEDMLPGI
101: INQLGPDNLE NLKRLAEHLQ KQSPSTATAA KQDNDDDDVP DLVPGETFEA AADESQAS
101: INQLGPDNLE NLKRLAEHLQ KQSPSTATAA KQDNDDDDVP DLVPGETFEA AADESQAS
001: MGKSSSMAVA EKISWYCAVF AAMMLLMNSF QVAQEGSTEI VEKQQPSMMI TGYSHRRPAC DEIYEVKEGE TLQTISEKCG DPYIVEGNPH IHDHDDLFPG
101: LLIRITPSL
101: LLIRITPSL
Arabidopsis Description
At3g52790 [Source:UniProtKB/TrEMBL;Acc:Q9LXI6]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.