Factsheet for GSMUA_Achr5P12940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P11780_001
GSMUA_Achr3P18580_001
GSMUA_Achr3P28040_001
GSMUA_Achr4P05970_001
GSMUA_Achr4P05990_001
GSMUA_Achr4P06000_001
GSMUA_Achr4P12750_001
GSMUA_Achr6P08310_001
GSMUA_Achr6P16240_001
GSMUA_Achr9P12470_001
GSMUA_Achr9P22750_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35620.1	GSMUA_Achr10P...	AT1G17880.1	15716105
AT5G35620.1	GSMUA_Achr3P18580_001	AT1G17880.1	15716105
AT5G35620.1	GSMUA_Achr6P08310_001	AT1G17880.1	15716105
AT5G35620.1	GSMUA_Achr6P16240_001	AT1G17880.1	15716105
AT5G35620.1	GSMUA_AchrUn_...	AT1G17880.1	15716105
AT5G35620.1	GSMUA_Achr3P11780_001	AT3G45140.1	11117257
AT5G35620.1	GSMUA_Achr9P12470_001	AT3G45140.1	11117257
AT5G35620.1	GSMUA_Achr3P28040_001	AT5G57870.1	21798944
AT5G35620.1	GSMUA_Achr4P05970_001	AT5G57870.1	21798944
AT5G35620.1	GSMUA_Achr4P05990_001	AT5G57870.1	21798944
AT5G35620.1	GSMUA_Achr4P06000_001	AT5G57870.1	21798944
AT5G35620.1	GSMUA_Achr4P12750_001	AT5G57870.1	21798944
AT5G35620.1	GSMUA_Achr9P22750_001	AT5G57870.1	21798944
AT5G35620.1	GSMUA_AchrUn_...	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P25000_001	Banana	cytosol	76.08	82.81
VIT_05s0049g01770.t01	Wine grape	cytosol	68.42	70.1
KRG90357	Soybean	endoplasmic reticulum	66.51	69.5
KRH33614	Soybean	cytosol	67.46	68.78
PGSC0003DMT400044186	Potato	cytosol	65.55	68.5
Solyc09g090580.2.1	Tomato	nucleus	64.59	67.5
TraesCS1B01G167100.1	Wheat	cytosol	66.51	66.51
Os10t0467600-01	Rice	cytosol, plastid	65.55	66.5
HORVU1Hr1G039260.2	Barley	cytosol	66.03	65.71
TraesCS1D01G146500.1	Wheat	golgi	65.07	65.07
TraesCS1A01G149200.1	Wheat	cytosol	66.03	64.79
EER94108	Sorghum	cytosol	65.07	64.76
Zm00001d032775_P002	Maize	cytosol, extracellular	63.64	63.33
Zm00001d014065_P001	Maize	cytosol, extracellular	65.07	62.96
AT5G35620.1	Thale cress	cytosol	57.89	61.11
Bra035393.1-P	Field mustard	cytosol	57.42	60.3
CDY38545	Canola	cytosol	56.94	60.1
Bra039484.1-P	Field mustard	cytosol	56.94	60.1
CDY49364	Canola	cytosol	57.42	60.0
Bra035531.1-P	Field mustard	cytosol	57.42	60.0
CDY33686	Canola	cytosol	56.94	59.8
CDY06456	Canola	cytosol	55.5	59.79
CDX84118	Canola	cytosol	56.94	59.5
CDX74645	Canola	cytosol	56.94	52.19
GSMUA_Achr3P02580_001	Banana	cytosol	50.24	45.85
GSMUA_Achr4P12820_001	Banana	cytosol	45.93	39.02
GSMUA_Achr4P11110_001	Banana	cytosol	27.75	25.66
GSMUA_Achr3P29580_001	Banana	cytosol	27.75	25.66

Protein Annotations

MapMan:17.4.2.3.1	MapMan:17.4.2.4.1	Gene3D:3.30.760.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G12940_001	EnsemblPlants:GSMUA_Achr5P12940_001	EnsemblPlants:GSMUA_Achr5T12940_001	InterPro:IPR023398
UniProt:M0SY23	PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF12	SUPFAM:SSF55418
InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI000296D1F5	SEG:seg	:

Description

Eukaryotic translation initiation factor 4E-2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G12940_001]

Coordinates

chr5:-:9234311..9237885

Molecular Weight (calculated)

23983.2 Da

IEP (calculated)

6.767

GRAVY (calculated)

-0.638

Length

209 amino acids

Sequence
(BLAST)

001: MRPTPNPSFL RMAEVGETMA ASSGGEGGVE APHRLERKWT FWFDNQSKPK QGAAWGSALR KVYTFDTVEE FWCLYDQIFR PSKLPANTDF HCFKSGIEPK
101: WEDPECANGG KWTVTCNRKA SLDTLWLETL MALIGEQFEE SEEICGIVVS VRQRQDKLAL WTKAASNEAV QMSIGRKWKE IIDFNEKIVY NFHDDSRRDK
201: SNRGGRYSV

Best Arabidopsis Sequence Match ( AT5G35620.3 )
(BLAST)

001: MATDDVNEPL PAAAELPATE AEKQPHKLER KWSFWFDNQS KKGAAWGASL RKAYTFDTVE DFWGLHETIF QTSKLTANAE IHLFKAGVEP KWEDPECANG
101: GKWTWVVTAN RKEALDKGWL ETLMALIGEQ FDEADEICGV VASVRPQSKQ DKLSLWTRTK SNEAVLMGIG KKWKEILDVT DKITFNNHDD SRRSRFTV

Arabidopsis Description

EIF(ISO)4ELSP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UEE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.