Factsheet for GSMUA_Achr4P06000_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr3P05360_001
GSMUA_Achr3P27750_001
GSMUA_Achr4P05720_001
GSMUA_Achr4P12470_001
GSMUA_Achr4P25000_001
GSMUA_Achr5P12940_001
GSMUA_Achr5P21990_001
GSMUA_Achr5P22630_001
GSMUA_Achr6P36010_001
GSMUA_Achr8P23820_001
GSMUA_Achr9P13950_001
GSMUA_Achr9P14160_001
GSMUA_Achr9P23140_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	GSMUA_Achr10P...	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr10P...	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr3P05360_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr3P27750_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr4P05720_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr4P12470_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr5P21990_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr5P22630_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr6P36010_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr8P23820_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr9P14160_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr9P23140_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr4P25000_001	AT5G35620.1	21798944
AT2G24050.1	GSMUA_Achr5P12940_001	AT5G35620.1	21798944
AT5G57870.1	GSMUA_Achr9P13950_001	AT1G72730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69274	Canola	cytosol, mitochondrion	63.41	7.95
GSMUA_Achr3P28040_001	Banana	cytosol	73.17	6.65
CDY28211	Canola	mitochondrion	63.41	5.51
GSMUA_Achr11P...	Banana	cytosol	36.59	4.53
GSMUA_Achr9P22750_001	Banana	plastid	80.49	4.44
Bra011218.1-P	Field mustard	plastid	58.54	4.39
GSMUA_AchrUn_...	Banana	cytosol	75.61	4.16
Os02t0611500-01	Rice	cytosol	75.61	3.97
KRH55033	Soybean	endoplasmic reticulum	73.17	3.87
HORVU2Hr1G086240.1	Barley	cytosol	70.73	3.85
Zm00001d025777_P007	Maize	plastid	73.17	3.82
Zm00001d003147_P001	Maize	plastid	73.17	3.82
EES12452	Sorghum	cytosol	73.17	3.79
Solyc07g005780.1.1	Tomato	cytosol	41.46	3.78
Bra020407.1-P	Field mustard	plastid	70.73	3.77
CDY32742	Canola	plastid	70.73	3.77
KRH63081	Soybean	endoplasmic reticulum	70.73	3.75
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	70.73	3.68
TraesCS2B01G373600.1	Wheat	cytosol	70.73	3.68
TraesCS2A01G354900.1	Wheat	cytosol	70.73	3.67
VIT_11s0037g00490.t01	Wine grape	plastid	70.73	3.65
PGSC0003DMT400020464	Potato	cytosol	68.29	3.62
Solyc07g005810.2.1	Tomato	plastid	68.29	3.62
AT2G24050.1	Thale cress	plastid	65.85	3.61
Os04t0499300-01	Rice	plastid	70.73	3.6
AT5G57870.1	Thale cress	plastid	68.29	3.59
PGSC0003DMT400029102	Potato	cytosol, plastid	68.29	3.59
KRH72326	Soybean	endoplasmic reticulum	68.29	3.57
KRH03030	Soybean	endoplasmic reticulum	68.29	3.55
CDY39236	Canola	cytosol	63.41	3.52
CDY02774	Canola	plastid	65.85	3.5
Solyc12g009960.1.1	Tomato	nucleus	65.85	3.49
CDX72262	Canola	cytosol	63.41	3.49
Bra024051.1-P	Field mustard	cytosol	63.41	3.48
CDX68687	Canola	plastid	63.41	3.48
Bra011211.1-P	Field mustard	plastid	63.41	3.47
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	73.17	3.4
AT1G62410.1	Thale cress	cytosol	17.07	3.14
Os06t0520600-01	Rice	extracellular	53.66	3.09
GSMUA_Achr4P12750_001	Banana	cytosol	80.49	2.84
GSMUA_Achr2P18290_001	Banana	cytosol	41.46	2.58
HORVU6Hr1G023180.1	Barley	cytosol	9.76	1.36
GSMUA_Achr11P...	Banana	nucleus	41.46	1.03
GSMUA_Achr11P...	Banana	nucleus	39.02	1.0
GSMUA_Achr8P14940_001	Banana	plastid	36.59	0.77
AT4G30680.1	Thale cress	mitochondrion, plastid	4.88	0.76
GSMUA_Achr2P18280_001	Banana	nucleus	9.76	0.39
CDY28203	Canola	cytosol	0.0	0.0
GSMUA_Achr4P05990_001	Banana	cytosol	0.0	0.0
GSMUA_Achr4P05970_001	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr4P06000_001	EnsemblPlants:GSMUA_Achr4T06000_001	EnsemblPlantsGene:GSMUA_Achr4G06000_001	Gene3D:1.25.40.180	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	InterPro:ARM-type_fold	InterPro:IPR016021	InterPro:MIF4-like_sf
InterPro:MIF4G-like_typ-3	PANTHER:PTHR23253	PANTHER:PTHR23253:SF48	PFAM:PF02854	SUPFAM:SSF48371	UniParc:UPI000294E93F
UniProt:M0SLG7	MapMan:35.2	:	:	:	:

Description

Eukaryotic initiation factor iso-4F subunit p82-34 [Source:GMGC_GENE;Acc:GSMUA_Achr4G06000_001]

Coordinates

chr4:-:4604924..4605287

Molecular Weight (calculated)

4566.8 Da

IEP (calculated)

8.539

GRAVY (calculated)

0.576

Length

41 amino acids

Sequence
(BLAST)

1: MIHCSILNKL TPEKFDVLKG QLINAGITTP NILKDVITLI F

Best Arabidopsis Sequence Match ( AT5G57870.2 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVPVQSA SRFSEPDSRD WRSRSTQPPP SGEERSWDNL REAKDSRYVE ASQYNRQDQP NSQFSRANIS SNQGGGPAPV LVKAEVPWSA
201: RRGNLSENDR VLKTVKGILN KLTPEKYDLL KGQLIESGIT SADILKGVIT LIFDKAVLEP TFCPMYAKLC SDINDQLPTF PPAEPGDKEI TFKRVLLNIC
301: QEAFEGASQL REELRQMSAP DQEAERNDKE KLLKLKTLGN IRLIGELLKQ KMVPEKIVHH IVQELLGADE KVCPAEENVE AICHFFKTIG KQLDGNVKSK
401: RINDVYFKRL QALSKNPQLE LRLRFMVQNI IDMRSNGWVP RREEMKARTI TEIHTEAEKN LGLRPGATAN MRRGMVSSGG PVSPGPVYPG GRPGAGGLMP
501: GMPGTRRMPG MPGVDNDNWE VPRTRSMSRR DGPGPLHSPA VSKSASMNTR LLPQGSSGIM SGKTSALLQG SGSVSRPVTV SAERPAQSVA PLTVPVPVEK
601: PQPSGPKLSE EVLQRKTKSL LEEYFNVRLL GEALQCVEEL GLPSYHPEFV KEAISLSLEK SPPVVEPIAT LLEYLLSKKV VAPKDLETGF LLYGAMLDDI
701: GIDLPKAPNN FGEIVGKLIL AGGVDFKLVR EIIGKMEDDR FQKMVVDAAV RIVESSEQGK SLLASQAADI EACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.