CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28211	Canola	mitochondrion	91.74	63.56
GSMUA_Achr4P06000_001	Banana	cytosol	7.95	63.41
Bra011211.1-P	Field mustard	plastid	92.97	40.59
Bra011218.1-P	Field mustard	plastid	66.97	40.04
CDX68687	Canola	plastid	90.21	39.44
CDY39236	Canola	cytosol	79.82	35.32
CDX72262	Canola	cytosol	77.68	34.05
Solyc07g005780.1.1	Tomato	cytosol	44.04	32.0
GSMUA_Achr3P28040_001	Banana	cytosol	41.59	30.16
KRH55033	Soybean	endoplasmic reticulum	65.75	27.74
KRH03030	Soybean	endoplasmic reticulum	66.36	27.5
KRH63081	Soybean	endoplasmic reticulum	64.53	27.26
PGSC0003DMT400020464	Potato	cytosol	64.22	27.17
KRH72326	Soybean	endoplasmic reticulum	64.22	26.79
Solyc12g009960.1.1	Tomato	nucleus	63.0	26.65
CDY32742	Canola	plastid	62.69	26.62
VIT_11s0037g00490.t01	Wine grape	plastid	64.22	26.45
Solyc07g005810.2.1	Tomato	plastid	62.39	26.39
GSMUA_Achr9P22750_001	Banana	plastid	59.94	26.34
CDY02774	Canola	plastid	61.47	26.04
PGSC0003DMT400029102	Potato	cytosol, plastid	62.08	26.03
GSMUA_AchrUn_...	Banana	cytosol	57.8	25.34
Os02t0611500-01	Rice	cytosol	59.94	25.13
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	59.63	24.75
TraesCS2B01G373600.1	Wheat	cytosol	59.63	24.71
TraesCS2A01G354900.1	Wheat	cytosol	59.63	24.68
Zm00001d003147_P001	Maize	plastid	59.33	24.68
EES12452	Sorghum	cytosol	59.63	24.65
Zm00001d025777_P007	Maize	plastid	58.72	24.46
Os04t0499300-01	Rice	plastid	60.24	24.44
HORVU2Hr1G086240.1	Barley	cytosol	55.96	24.3
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	59.94	22.2
GSMUA_Achr4P05990_001	Banana	cytosol	9.79	21.77
CDY28203	Canola	cytosol	30.58	19.57
Os06t0520600-01	Rice	extracellular	37.61	17.3
GSMUA_Achr4P12750_001	Banana	cytosol	58.72	16.55
CDX98293	Canola	cytosol	26.3	12.04
CDX89056	Canola	cytosol	17.74	9.88
AT4G30680.1	Thale cress	mitochondrion, plastid	7.03	8.75
HORVU6Hr1G023180.1	Barley	cytosol	5.81	6.44
CDY42674	Canola	plastid	27.52	5.67
CDX89055	Canola	nucleus	11.31	4.07
GSMUA_Achr4P05970_001	Banana	cytosol	1.53	3.31

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	GO:A0A078JR57	UniProt:A0A078JR57	InterPro:ARM-type_fold	EnsemblPlants:CDY69274
ProteinID:CDY69274	ProteinID:CDY69274.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00086133001	InterPro:IPR016021	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3	PFAM:PF02854
PANTHER:PTHR23253	PANTHER:PTHR23253:SF48	SMART:SM00543	SUPFAM:SSF48371	UniParc:UPI0004EF4878	SEG:seg

Description

BnaAnng29900DBnaAnng29900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JR57]

Coordinates

chrLK039005:+:2074..4061

Molecular Weight (calculated)

36454.6 Da

IEP (calculated)

8.061

GRAVY (calculated)

-0.579

Length

327 amino acids

Sequence
(BLAST)

001: MLSLRPGGGR GGSIFAPRSA LSSSSSSDLT NAEDAPSFAV KRGDSRFEGH EIVRFTREQL LQLKEGSQVS DEVLKLGKDI ASDLFGEEQS WGRSENKPAA
101: QVQNRYSETD NRDWHTRAPI PSPSKDRSRE DQRESRDAYS GSIQGSGPPP ALVKAEVPWS AKRGTLSEKD QVLKTVKGIL NKMTPEKYDL LKGQLIDSGI
201: TSADILKGVI QLIFEKAVLE PTFCQMYALL CFDINGKLPS FPSEEAGGKE ITFKRVLLNN CQEQFEGADK LKEEVRLMTD PAQEMERKDK ERMAKLRTLG
301: NIRLIGELLK QKMVPEKILH HIVQVLL

Best Arabidopsis Sequence Match ( AT2G24050.1 )
(BLAST)

001: MQQQGEPSVL SLRPGGGGGK SRLFVPRFSS SSSFDLTNGG SEETPFPVKR ENSGERVRFS REEILQHRES VQVSDEILRR CKEIAVELFG EEQSWGNHAA
101: ESKITNHTQH RHTETDNRDW HSRSQIPTSG KEWLRDDPRE AKSTWQGSGP TPVLIKAEVP WSAKRGALSD KDRVVKSVKG ILNKLTPEKY ELLKGQLIDA
201: GITSADILKE VIQLIFENAI LQPTFCEMYA LLCFDINGQL PSFPSEEPGG KEITFKRVLL NNCQEAFEGA GKLKEEIRQM TNPDQEMERM DKEKMAKLRT
301: LGNIRLIGEL LKQKMVPEKI VHHIVQELLG DDTKACPAEG DVEALCQFFI TIGKQLDDSP RSRGINDTYF GRLKELARHP QLELRLRFMV QNVVDLRANK
401: WVPRREEVKA KKINEIHSEA ERNLGMRPGA MASMRNNNNN RAAVSGAADG MGLGNILGRP GTGGMMPGMP GTRVMPMDED GWEMARTRSM PRGNRQTVQQ
501: PRFQPPPAIN KSLSVNSRLL PQGSGGLLNG GGRPSPLLQG NGSSSAPQAS KPIPTVEKPQ PRSQPQPQPQ AAPLANSLNA GELERKTKSL LEEYFSIRLV
601: DEALQCVEEL KSPSYHPELV KETISLGLEK NPPLVEPIAK LLKHLISKNV LTSKDLGAGC LLYGSMLDDI GIDLPKAPNS FGEFLGELVS AKVLDFELVR
701: DVLKKMEDEW FRKTVLNAVI KSVRECPSGQ SVLDSQAVEV EACQSLL

Arabidopsis Description

EIF(ISO)4G2Eukaryotic translation initiation factor isoform 4G-2 [Source:UniProtKB/Swiss-Prot;Acc:O82233]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.