Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 21.43 | 46.22 |
| CDX89056 | Canola | cytosol | 25.35 | 30.83 |
| GSMUA_Achr2P18290_001 | Banana | cytosol | 26.05 | 28.27 |
| CDY69274 | Canola | cytosol, mitochondrion | 12.04 | 26.3 |
| CDY28211 | Canola | mitochondrion | 16.95 | 25.64 |
| PGSC0003DMT400004663 | Potato | nucleus | 28.01 | 24.15 |
| CDY32742 | Canola | plastid | 20.45 | 18.96 |
| CDY02774 | Canola | plastid | 20.45 | 18.91 |
| CDX68687 | Canola | plastid | 19.47 | 18.58 |
| CDY39236 | Canola | cytosol | 19.19 | 18.54 |
| CDX72262 | Canola | cytosol | 19.33 | 18.5 |
| CDY28203 | Canola | cytosol | 13.17 | 18.4 |
| CDY42674 | Canola | plastid | 32.49 | 14.61 |
| GSMUA_Achr11P... | Banana | nucleus | 29.69 | 13.19 |
| KRH66436 | Soybean | endoplasmic reticulum | 30.67 | 13.13 |
| KRH48862 | Soybean | nucleus | 29.97 | 12.78 |
| Solyc08g077700.2.1 | Tomato | nucleus | 28.85 | 12.5 |
| Zm00001d006573_P002 | Maize | cytosol | 31.79 | 12.37 |
| KXG36457 | Sorghum | cytosol | 31.65 | 12.34 |
| VIT_15s0021g00980.t01 | Wine grape | nucleus | 29.27 | 12.21 |
| Zm00001d021741_P001 | Maize | nucleus | 31.09 | 12.19 |
| GSMUA_Achr11P... | Banana | nucleus | 28.15 | 12.14 |
| TraesCS2D01G388100.1 | Wheat | nucleus | 29.27 | 11.73 |
| TraesCS2A01G390600.1 | Wheat | nucleus, plastid | 29.13 | 11.67 |
| KXG26815 | Sorghum | nucleus | 29.97 | 11.59 |
| HORVU2Hr1G041760.1 | Barley | nucleus | 29.55 | 11.56 |
| HORVU2Hr1G092940.7 | Barley | nucleus | 28.85 | 11.55 |
| TraesCS2B01G408800.1 | Wheat | nucleus | 28.85 | 11.55 |
| KRH75579 | Soybean | endoplasmic reticulum | 28.99 | 11.36 |
| KRH46542 | Soybean | nucleus | 29.13 | 11.32 |
| TraesCS2D01G215300.1 | Wheat | nucleus | 29.69 | 11.32 |
| Zm00001d025979_P007 | Maize | nucleus | 28.85 | 11.32 |
| TraesCS2A01G209100.1 | Wheat | nucleus | 29.69 | 11.3 |
| HORVU2Hr1G041770.2 | Barley | nucleus | 29.55 | 11.28 |
| TraesCS2B01G235100.1 | Wheat | golgi | 29.55 | 11.25 |
| GSMUA_Achr8P14940_001 | Banana | plastid | 30.39 | 11.16 |
| Os07t0555200-01 | Rice | nucleus, plastid | 11.06 | 6.1 |
| CDX89055 | Canola | nucleus | 7.42 | 5.84 |
Protein Annotations
| Gene3D:1.25.40.180 | MapMan:17.4.2.3.2 | GO:A0A078EG04 | InterPro:ARM-type_fold | EnsemblPlants:CDX98293 | ProteinID:CDX98293 |
| ProteinID:CDX98293.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00105830001 | InterPro:IPR016021 | InterPro:MIF4-like_sf | InterPro:MIF4G-like_typ-3 | PFAM:PF02854 |
| PANTHER:PTHR23253 | PANTHER:PTHR23253:SF35 | SMART:SM00543 | SUPFAM:SSF48371 | UniParc:UPI0004EAF79B | SEG:seg |
Description
BnaC06g16540D
Coordinates
chrLK031904:-:406958..410551
Molecular Weight (calculated)
80162.7 Da
IEP (calculated)
7.743
GRAVY (calculated)
-0.625
Length
714 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYNQSTSDR SDIQYRRTRR STGYHQQQQQ PHRSSPAGYG RGAGTGAVTD SSTNVDPCSS SKRSGSLEKP NNAQGWHQPR VNHSVPDNHN GPNVQSRSQV
101: AGASGGAIPK APTSQSTTLN TAKAPGDPFS LGPDLMKVTV WGPKQDLLNK AADNQLKKEG NSPSSEKTDV QVQHISLPSH MQKSPVTNIR IPSLQTPDQD
201: PQVPHPMHFG GPNMHMQPPN VAPASFQMTL STGNTLQIQQ QVFFQDLPPS HPMHQAQGHG FATPMGAQIH PQLGQQKGPF SSPHTPVQVL HKAERKYQVG
301: AVVEQAKQWK FKGILNKLTP QNFEKLLEQV KSVNIDNAVT LIGVVSQIFD KALMEPTFCE MYADLCFHLS GALPDFKWNG EKISFKRLFL NKCQKEFERG
401: ERGEREEEEA SRVGRVGEEG QTEQEREEKR LNVRRRMLCN IRLIGELYKK KMLTERIMHA CIQKLLGYDQ EDPHEENIEA LCKLMCTIGV MIDHDKAKVP
501: MDAYFERMKM LSCKQELSSW ARFMLVNVID LRKNKWQESV KLEGPIPDTV GNKDSCVFLK ETSTINESMD VNGFNVLPSQ VESVRRLFER HPDIAVRFRA
601: KNQLLRNSCM NSLLSLIETL CQPLEDLSNE DLIGAEIALT YVKDSGFSVD WLEKKLDQVK EMKEKEVSGL AILQVTEEKL LKLKQKCAEL EALAEEQKAE
701: SSATITPLSF YDVV
101: AGASGGAIPK APTSQSTTLN TAKAPGDPFS LGPDLMKVTV WGPKQDLLNK AADNQLKKEG NSPSSEKTDV QVQHISLPSH MQKSPVTNIR IPSLQTPDQD
201: PQVPHPMHFG GPNMHMQPPN VAPASFQMTL STGNTLQIQQ QVFFQDLPPS HPMHQAQGHG FATPMGAQIH PQLGQQKGPF SSPHTPVQVL HKAERKYQVG
301: AVVEQAKQWK FKGILNKLTP QNFEKLLEQV KSVNIDNAVT LIGVVSQIFD KALMEPTFCE MYADLCFHLS GALPDFKWNG EKISFKRLFL NKCQKEFERG
401: ERGEREEEEA SRVGRVGEEG QTEQEREEKR LNVRRRMLCN IRLIGELYKK KMLTERIMHA CIQKLLGYDQ EDPHEENIEA LCKLMCTIGV MIDHDKAKVP
501: MDAYFERMKM LSCKQELSSW ARFMLVNVID LRKNKWQESV KLEGPIPDTV GNKDSCVFLK ETSTINESMD VNGFNVLPSQ VESVRRLFER HPDIAVRFRA
601: KNQLLRNSCM NSLLSLIETL CQPLEDLSNE DLIGAEIALT YVKDSGFSVD WLEKKLDQVK EMKEKEVSGL AILQVTEEKL LKLKQKCAEL EALAEEQKAE
701: SSATITPLSF YDVV
0001: MSYNQSRPDR SETQYRRTGR STGNQQQQQQ HRSSSAAGYG KGAGAPGSAP APSTYPDNSS LSSNRSFKKP GNAQGGGQPR VNLPPVNHPN NHNNGPNAHS
0101: RSQGEPGVGG PTNPTESFNR NTGPIPKAPT SQSTVMSSKI NETPNTAKVA ASGDASQAFP LQFGSLGPDL MVPARTTSAP PNMDDQKRAQ MQQSSLRTAS
0201: NVPASVPKKD SSNKGADNQL MRKEGHNPSS EKADIQVPHI APPSQTQKSP ITNIRMPSVQ TPYQHTQVPH PVHFGGPNMH MQTPVTATSF QMPMPMALSM
0301: GNTPQIPPQV FYQGHPPHPM HHQGMMHQAQ GHGFATPMGA QIHPQLGHVG VGLSPQYPQQ QGGKYGGARK TTPVKITHPD THEELRLDRR GDPYSEGDST
0401: ALKPHSNPPP RSQPVSSFAP RPVNLVQPSY NSNTMIYPPV SVPLNNGPMS SAQAPRYHYP VIDGSQRVQL INQPAHTAPQ LIRPAAPAHL SSDSTSSVKA
0501: RNAQNVMSSA LPVNAKVSVK PAGVSEKLGS PKDRSHGEVN ISLSQKNVEA CSLSSSQQPK PSFVSGVPNS SAPPAKSPVE TVPLAKSSVE TVPPVKSSVE
0601: TAPVTTTEIR RAEMVSESIS VEDQTCKVEP PHNLTENRGQ TMPDSLVSDP ETATVAAKEN LSLPATNGFR KQLLKVSTTS DAPTSDSVDT SIDKSTEGSS
0701: HASSEISGSS PQEKDLKCDN RTASDKLDER SVISDAKHET LSGVLEKAQN EVDGATDVCP VSEKLAVTDD TSSDLPHSTH VLSSTVPLGH SETHKSAVET
0801: NTRRNTSTKG KKKIKEILQK ADAAGTTSDL YMAYKGPEEK KESSNVVHDV SNQNLLPAIP QAVEAIVDTE PVKNEPEDWE DAADVSTPKL ETADNSVNAK
0901: RGSSDEVSDN CINTEKKYSR DFLLKFADLC TALPEGFDVS PDIANALIVA YMGASHHEHD SYPTPGKVMD RQASGARLDR RPSNVAGDDR WTKNQGSLPA
1001: GYGGNVGFRP GQGGNSGVLR NPRMQGPIIS RPMQPVGPMG GMGRNTPDLE RWQRGSNFQQ KGLFPSPHTP MQVMHKAERK YQVGTIADEE QAKQRQLKSI
1101: LNKLTPQNFE KLFEQVKSVN IDNAVTLSGV ISQIFDKALM EPTFCEMYAD FCFHLSGALP DFNENGEKIT FKRLLLNKCQ EEFERGEKEE EEASRVAEEG
1201: QVEQTEEERE EKRLQVRRRM LGNIRLIGEL YKKRMLTEKI MHACIQKLLG YNQDPHEENI EALCKLMSTI GVMIDHNKAK FQMDGYFEKM KMLSCKQELS
1301: SRVRFMLINA IDLRKNKWQE RMKVEGPKKI EEVHRDAAQE RQTQANRLSR GPSMNSSGRR GHMEFSSPRG GGGMLSPPAA QMGSYHGPPQ GRGFSNQDIR
1401: FDDRPSYEPR MVPMPQRSVC EEPITLGPQG GLGQGMSIRR PAVASNTYQS DATQAGGGDS RRPAGGLNGF GSHRPASPVT HGRSSPQERG TAYVHREFAS
1501: LSRASDLSPE VSSARQVLQG PSATVNSPRE NALSEEQLEN LSLSAIKEYY SARDENEIGM CMKDMNSPAY HPTMISLWVT DSFERKDKER DLLAKLLVNL
1601: VKSADNALNE VQLVKGFESV LKTLEDAVND APKAAEFLGR IFGKSVTEKV VTLTEIGRLI QEGGEEPGSL IEFGLGGDVL GSVLEMIKTE AGEETLVEIR
1701: RSSGLRIENF KPHAPNRSKI LEKFT
0101: RSQGEPGVGG PTNPTESFNR NTGPIPKAPT SQSTVMSSKI NETPNTAKVA ASGDASQAFP LQFGSLGPDL MVPARTTSAP PNMDDQKRAQ MQQSSLRTAS
0201: NVPASVPKKD SSNKGADNQL MRKEGHNPSS EKADIQVPHI APPSQTQKSP ITNIRMPSVQ TPYQHTQVPH PVHFGGPNMH MQTPVTATSF QMPMPMALSM
0301: GNTPQIPPQV FYQGHPPHPM HHQGMMHQAQ GHGFATPMGA QIHPQLGHVG VGLSPQYPQQ QGGKYGGARK TTPVKITHPD THEELRLDRR GDPYSEGDST
0401: ALKPHSNPPP RSQPVSSFAP RPVNLVQPSY NSNTMIYPPV SVPLNNGPMS SAQAPRYHYP VIDGSQRVQL INQPAHTAPQ LIRPAAPAHL SSDSTSSVKA
0501: RNAQNVMSSA LPVNAKVSVK PAGVSEKLGS PKDRSHGEVN ISLSQKNVEA CSLSSSQQPK PSFVSGVPNS SAPPAKSPVE TVPLAKSSVE TVPPVKSSVE
0601: TAPVTTTEIR RAEMVSESIS VEDQTCKVEP PHNLTENRGQ TMPDSLVSDP ETATVAAKEN LSLPATNGFR KQLLKVSTTS DAPTSDSVDT SIDKSTEGSS
0701: HASSEISGSS PQEKDLKCDN RTASDKLDER SVISDAKHET LSGVLEKAQN EVDGATDVCP VSEKLAVTDD TSSDLPHSTH VLSSTVPLGH SETHKSAVET
0801: NTRRNTSTKG KKKIKEILQK ADAAGTTSDL YMAYKGPEEK KESSNVVHDV SNQNLLPAIP QAVEAIVDTE PVKNEPEDWE DAADVSTPKL ETADNSVNAK
0901: RGSSDEVSDN CINTEKKYSR DFLLKFADLC TALPEGFDVS PDIANALIVA YMGASHHEHD SYPTPGKVMD RQASGARLDR RPSNVAGDDR WTKNQGSLPA
1001: GYGGNVGFRP GQGGNSGVLR NPRMQGPIIS RPMQPVGPMG GMGRNTPDLE RWQRGSNFQQ KGLFPSPHTP MQVMHKAERK YQVGTIADEE QAKQRQLKSI
1101: LNKLTPQNFE KLFEQVKSVN IDNAVTLSGV ISQIFDKALM EPTFCEMYAD FCFHLSGALP DFNENGEKIT FKRLLLNKCQ EEFERGEKEE EEASRVAEEG
1201: QVEQTEEERE EKRLQVRRRM LGNIRLIGEL YKKRMLTEKI MHACIQKLLG YNQDPHEENI EALCKLMSTI GVMIDHNKAK FQMDGYFEKM KMLSCKQELS
1301: SRVRFMLINA IDLRKNKWQE RMKVEGPKKI EEVHRDAAQE RQTQANRLSR GPSMNSSGRR GHMEFSSPRG GGGMLSPPAA QMGSYHGPPQ GRGFSNQDIR
1401: FDDRPSYEPR MVPMPQRSVC EEPITLGPQG GLGQGMSIRR PAVASNTYQS DATQAGGGDS RRPAGGLNGF GSHRPASPVT HGRSSPQERG TAYVHREFAS
1501: LSRASDLSPE VSSARQVLQG PSATVNSPRE NALSEEQLEN LSLSAIKEYY SARDENEIGM CMKDMNSPAY HPTMISLWVT DSFERKDKER DLLAKLLVNL
1601: VKSADNALNE VQLVKGFESV LKTLEDAVND APKAAEFLGR IFGKSVTEKV VTLTEIGRLI QEGGEEPGSL IEFGLGGDVL GSVLEMIKTE AGEETLVEIR
1701: RSSGLRIENF KPHAPNRSKI LEKFT
Arabidopsis Description
EIF4GEukaryotic translation initiation factor 4G [Source:UniProtKB/Swiss-Prot;Acc:Q76E23]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.