CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024051.1-P	Field mustard	cytosol	99.32	98.13
CDX72262	Canola	cytosol	87.14	86.33
CDX68687	Canola	plastid	82.68	81.68
CDY69274	Canola	cytosol, mitochondrion	35.32	79.82
CDY28203	Canola	cytosol	54.4	78.67
CDY28211	Canola	mitochondrion	46.96	73.52
GSMUA_Achr4P06000_001	Banana	cytosol	3.52	63.41
AT4G30680.1	Thale cress	mitochondrion, plastid	22.19	62.36
GSMUA_Achr4P05990_001	Banana	cytosol	11.91	59.86
VIT_11s0037g00490.t01	Wine grape	plastid	62.92	58.56
KRH55033	Soybean	endoplasmic reticulum	60.35	57.55
CDY32742	Canola	plastid	59.95	57.53
KRH03030	Soybean	endoplasmic reticulum	61.3	57.41
KRH72326	Soybean	endoplasmic reticulum	60.89	57.4
CDY02774	Canola	plastid	59.54	56.99
KRH63081	Soybean	endoplasmic reticulum	59.68	56.98
Solyc07g005810.2.1	Tomato	plastid	58.73	56.14
PGSC0003DMT400020464	Potato	cytosol	58.59	56.02
PGSC0003DMT400029102	Potato	cytosol, plastid	58.46	55.38
Solyc12g009960.1.1	Tomato	nucleus	57.92	55.37
GSMUA_Achr9P22750_001	Banana	plastid	54.94	54.57
HORVU2Hr1G086240.1	Barley	cytosol	55.07	54.05
Zm00001d025777_P007	Maize	plastid	56.56	53.25
GSMUA_AchrUn_...	Banana	cytosol	53.72	53.22
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	56.56	53.05
TraesCS2A01G354900.1	Wheat	cytosol	56.7	53.04
TraesCS2B01G373600.1	Wheat	cytosol	56.56	52.98
EES12452	Sorghum	cytosol	56.7	52.97
Zm00001d003147_P001	Maize	plastid	56.16	52.8
Os02t0611500-01	Rice	cytosol	52.91	50.13
Os04t0499300-01	Rice	plastid	54.4	49.88
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	59.54	49.83
GSMUA_Achr3P28040_001	Banana	cytosol	27.47	45.01
GSMUA_Achr4P05970_001	Banana	cytosol	8.25	40.4
Solyc07g005780.1.1	Tomato	cytosol	23.95	39.33
HORVU6Hr1G023180.1	Barley	cytosol	15.16	37.97
GSMUA_Achr4P12750_001	Banana	cytosol	56.97	36.29
CDX89056	Canola	cytosol	20.84	26.24
Os06t0520600-01	Rice	extracellular	19.08	19.83
CDX98293	Canola	cytosol	18.54	19.19
CDY42674	Canola	plastid	24.49	11.4
CDX89055	Canola	nucleus	9.47	7.71

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	GO:A0A078HNR7	UniProt:A0A078HNR7	InterPro:ARM-type_fold	EnsemblPlants:CDY39236
ProteinID:CDY39236	ProteinID:CDY39236.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00067457001	InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	InterPro:MIF4-like_sf
InterPro:MIF4G-like_typ-3	PFAM:PF02847	PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32
SMART:SM00543	SMART:SM00544	SUPFAM:SSF48371	UniParc:UPI0004EE39EE	SEG:seg	:

Description

BnaA03g50480DBnaA03g50480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNR7]

Coordinates

chrLK032443:-:265855..269064

Molecular Weight (calculated)

81614.0 Da

IEP (calculated)

7.451

GRAVY (calculated)

-0.529

Length

739 amino acids

Sequence
(BLAST)

001: MEQQGDRPVL SLRPGGGGRG GSRLFAHRPS SSSSDFTNGA DAPSFAVRRG EGHEILRFTR EQLLQLKEAI QVSEEILKLS REISADIFGE EQSWGRSETK
101: PAAQAQNRFS ETDNRDWHTR APAPSPSRER SREDQREPRD ARAGSGPPPV LVKAEVPWSA KRGTLSEKDQ VLKTVKGILN KMTPEKYDLL KGQLIDSGIT
201: SADILKGVIQ LIFEKAVLEP TFCQMYALLC FDINGKLPSF PSEEAGGKEI TFKRVLLNNC QEQFEGADKL KQEIRLMTDP EQEMDRRDKE RMLKLRTLGN
301: IRLIGELLKQ KMVPEKIVHH IVQELLGSDV KACPAEEDVE ALCQFFITIG KQLDESPRSR GTNDTYFLRL KELAMHPMLA PRLRFMVRNV IDLRADNWVP
401: RREEMKAKKI TEIHSEAERN LGLRPGAMAN MRNNNNRSGA DAGAADSGNF YGRSGTGGMM PGMPGARQMP GMPVTDDDGW EMARSRSMPR GNRQNQQPAG
501: RVQSPVIGKS PSVNSRLLPQ GSGGLLAGRP SALLQGSGAE QPKPLPSPSK PAMEKPQSQA QPQPQEAASP MTTTLDSEVL SRKTKSLLEE YFNVRIMDEA
601: LQCVEELKSP AYHPELVKEA ISLGLEKNPP CVEPVARLLE YLVSKTVLTT KDIGSGCLLY GSMLDDIGID LPKAPNNFGE ILGSLVMANA SDFETVEEIL
701: KKMEDDRFKK AVLDAVIKSV SESLLAAQAA KIEACRSLV

Best Arabidopsis Sequence Match ( AT2G24050.1 )
(BLAST)

001: MQQQGEPSVL SLRPGGGGGK SRLFVPRFSS SSSFDLTNGG SEETPFPVKR ENSGERVRFS REEILQHRES VQVSDEILRR CKEIAVELFG EEQSWGNHAA
101: ESKITNHTQH RHTETDNRDW HSRSQIPTSG KEWLRDDPRE AKSTWQGSGP TPVLIKAEVP WSAKRGALSD KDRVVKSVKG ILNKLTPEKY ELLKGQLIDA
201: GITSADILKE VIQLIFENAI LQPTFCEMYA LLCFDINGQL PSFPSEEPGG KEITFKRVLL NNCQEAFEGA GKLKEEIRQM TNPDQEMERM DKEKMAKLRT
301: LGNIRLIGEL LKQKMVPEKI VHHIVQELLG DDTKACPAEG DVEALCQFFI TIGKQLDDSP RSRGINDTYF GRLKELARHP QLELRLRFMV QNVVDLRANK
401: WVPRREEVKA KKINEIHSEA ERNLGMRPGA MASMRNNNNN RAAVSGAADG MGLGNILGRP GTGGMMPGMP GTRVMPMDED GWEMARTRSM PRGNRQTVQQ
501: PRFQPPPAIN KSLSVNSRLL PQGSGGLLNG GGRPSPLLQG NGSSSAPQAS KPIPTVEKPQ PRSQPQPQPQ AAPLANSLNA GELERKTKSL LEEYFSIRLV
601: DEALQCVEEL KSPSYHPELV KETISLGLEK NPPLVEPIAK LLKHLISKNV LTSKDLGAGC LLYGSMLDDI GIDLPKAPNS FGEFLGELVS AKVLDFELVR
701: DVLKKMEDEW FRKTVLNAVI KSVRECPSGQ SVLDSQAVEV EACQSLL

Arabidopsis Description

EIF(ISO)4G2Eukaryotic translation initiation factor isoform 4G-2 [Source:UniProtKB/Swiss-Prot;Acc:O82233]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.