Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G30680.1 | Thale cress | mitochondrion, plastid | 39.07 | 22.43 |
| HORVU6Hr1G023180.1 | Barley | cytosol | 38.41 | 19.66 |
| CDY28203 | Canola | cytosol | 38.41 | 11.35 |
| GSMUA_Achr9P22750_001 | Banana | plastid | 55.63 | 11.29 |
| Bra011218.1-P | Field mustard | plastid | 40.4 | 11.15 |
| GSMUA_AchrUn_... | Banana | cytosol | 47.02 | 9.52 |
| HORVU2Hr1G086240.1 | Barley | cytosol | 45.7 | 9.16 |
| EES12452 | Sorghum | cytosol | 46.36 | 8.85 |
| AT5G57870.1 | Thale cress | plastid | 45.7 | 8.85 |
| TraesCS2D01G353600.1 | Wheat | cytosol, golgi, nucleus | 45.7 | 8.76 |
| TraesCS2A01G354900.1 | Wheat | cytosol | 45.7 | 8.73 |
| Zm00001d025777_P007 | Maize | plastid | 45.03 | 8.66 |
| KRH63081 | Soybean | endoplasmic reticulum | 44.37 | 8.66 |
| KRH55033 | Soybean | endoplasmic reticulum | 44.37 | 8.65 |
| TraesCS2B01G373600.1 | Wheat | cytosol | 45.03 | 8.62 |
| Zm00001d003147_P001 | Maize | plastid | 44.37 | 8.52 |
| VIT_11s0037g00490.t01 | Wine grape | plastid | 44.37 | 8.44 |
| Bra011211.1-P | Field mustard | plastid | 41.72 | 8.41 |
| Os02t0611500-01 | Rice | cytosol | 43.05 | 8.33 |
| CDY32742 | Canola | plastid | 42.38 | 8.31 |
| Bra020407.1-P | Field mustard | plastid | 42.38 | 8.31 |
| CDX68687 | Canola | plastid | 41.06 | 8.29 |
| Bra024051.1-P | Field mustard | cytosol | 41.06 | 8.29 |
| CDY39236 | Canola | cytosol | 40.4 | 8.25 |
| CDX72262 | Canola | cytosol | 40.4 | 8.18 |
| KRH72326 | Soybean | endoplasmic reticulum | 42.38 | 8.16 |
| CDY02774 | Canola | plastid | 41.06 | 8.03 |
| Solyc07g005810.2.1 | Tomato | plastid | 41.06 | 8.02 |
| KRH03030 | Soybean | endoplasmic reticulum | 41.72 | 7.98 |
| Os04t0499300-01 | Rice | plastid | 42.38 | 7.94 |
| VIT_04s0008g06770.t01 | Wine grape | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 46.36 | 7.93 |
| AT2G24050.1 | Thale cress | plastid | 39.07 | 7.9 |
| PGSC0003DMT400029102 | Potato | cytosol, plastid | 39.74 | 7.69 |
| PGSC0003DMT400020464 | Potato | cytosol | 38.41 | 7.5 |
| Solyc12g009960.1.1 | Tomato | nucleus | 37.75 | 7.37 |
| GSMUA_Achr4P12750_001 | Banana | cytosol | 54.3 | 7.07 |
| GSMUA_Achr4P05990_001 | Banana | cytosol | 4.64 | 4.76 |
| GSMUA_Achr2P18290_001 | Banana | cytosol | 18.54 | 4.26 |
| GSMUA_Achr3P28040_001 | Banana | cytosol | 9.93 | 3.33 |
| CDY28211 | Canola | mitochondrion | 8.61 | 2.75 |
| AT1G62410.1 | Thale cress | cytosol | 3.97 | 2.69 |
| GSMUA_Achr11P... | Banana | cytosol | 4.64 | 2.11 |
| GSMUA_Achr11P... | Banana | nucleus | 19.21 | 1.75 |
| GSMUA_Achr11P... | Banana | nucleus | 18.54 | 1.74 |
| Os06t0520600-01 | Rice | extracellular | 7.95 | 1.69 |
| GSMUA_Achr2P18280_001 | Banana | nucleus | 11.26 | 1.66 |
| CDY69274 | Canola | cytosol, mitochondrion | 3.31 | 1.53 |
| GSMUA_Achr8P14940_001 | Banana | plastid | 16.56 | 1.29 |
| Solyc07g005780.1.1 | Tomato | cytosol | 3.31 | 1.11 |
| GSMUA_Achr4P06000_001 | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P05970_001 | EnsemblPlants:GSMUA_Achr4T05970_001 | EnsemblPlantsGene:GSMUA_Achr4G05970_001 | Gene3D:1.25.40.180 | GO:GO:0003674 | GO:GO:0005488 |
| InterPro:ARM-type_fold | InterPro:IPR003891 | InterPro:IPR016021 | InterPro:Initiation_fac_eIF4g_MI | InterPro:MIF4-like_sf | PANTHER:PTHR23253 |
| PANTHER:PTHR23253:SF32 | PFAM:PF02847 | PFscan:PS51366 | SMART:SM00544 | SUPFAM:SSF48371 | UniParc:UPI0002950145 |
| UniProt:M0SLG4 | MapMan:35.1 | : | : | : | : |
Description
eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G05970_001]
Coordinates
chr4:-:4602789..4603795
Molecular Weight (calculated)
17359.2 Da
IEP (calculated)
6.620
GRAVY (calculated)
-0.241
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKSVATPKF NTSELHKKMI ALLEEYFHIR LLDEALQCVG ELKSPEYHPE VAKEAINLAV VKGLSWLKSI IKLLEYSLTK KVFPPRDLGT GCLLHGALLD
101: DICIDLPKAL SYNKESCFYM LYRQHKLSME YGIPCEELHP QELKTDHQRA E
101: DICIDLPKAL SYNKESCFYM LYRQHKLSME YGIPCEELHP QELKTDHQRA E
001: MQQGDSMLSL RPGGGRGGSR RFAPRFTLSS SSDLTNGGDA PSFAVKGSGG LLNDRPSALV QGNGSQQPKP VPSPTRQTVE KPKPQPQPQE VAPPTTTSLN
101: TVELSRKTNS LLEEYFNVRL LDEALQCIEE LKTPSYHPEL VKEAISLGLE KNPPCVEPVA KLLEHLVSKN VLTPKDLRNG CLLYGSMLDD IGIDLPKAPN
201: NFGEILGSLV MAKASDSELV KEILMKMGDE WFKKAVLEAV MRSVSESLLT TEAVEVEACR GLV
101: TVELSRKTNS LLEEYFNVRL LDEALQCIEE LKTPSYHPEL VKEAISLGLE KNPPCVEPVA KLLEHLVSKN VLTPKDLRNG CLLYGSMLDD IGIDLPKAPN
201: NFGEILGSLV MAKASDSELV KEILMKMGDE WFKKAVLEAV MRSVSESLLT TEAVEVEACR GLV
Arabidopsis Description
Initiation factor eIF-4 gamma, MA3 [Source:UniProtKB/TrEMBL;Acc:Q9SUH8]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.