Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr1P21300_001 | |
| GSMUA_Achr8P18250_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P21990_001 | Banana | nucleus | 52.98 | 59.58 |
| GSMUA_Achr9P14160_001 | Banana | nucleus | 47.02 | 50.0 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 46.61 | 50.0 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 42.92 | 47.72 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 42.3 | 44.4 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 30.6 | 42.57 |
| GSMUA_Achr10P... | Banana | nucleus | 43.94 | 42.46 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 29.98 | 42.2 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 35.52 | 41.59 |
| VIT_01s0010g03710.t01 | Wine grape | nucleus | 39.22 | 40.04 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 37.58 | 39.02 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 41.07 | 37.95 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 36.14 | 37.85 |
| Bra033671.1-P | Field mustard | nucleus | 27.93 | 37.57 |
| PGSC0003DMT400084734 | Potato | nucleus | 35.11 | 36.77 |
| Solyc05g015510.2.1 | Tomato | nucleus | 34.7 | 36.5 |
| GSMUA_Achr6P27520_001 | Banana | plastid | 11.29 | 35.95 |
| Bra027478.1-P | Field mustard | nucleus | 28.75 | 35.9 |
| CDY32959 | Canola | nucleus | 28.75 | 35.9 |
| CDY43604 | Canola | nucleus | 28.34 | 35.84 |
| KRG97402 | Soybean | nucleus | 31.21 | 35.1 |
| CDY03913 | Canola | nucleus | 26.69 | 35.04 |
| KRH31506 | Soybean | nucleus | 31.83 | 34.99 |
| PGSC0003DMT400068752 | Potato | nucleus | 27.52 | 34.81 |
| CDY27612 | Canola | nucleus | 23.2 | 34.35 |
| Bra032823.1-P | Field mustard | nucleus | 23.0 | 34.15 |
| CDX84927 | Canola | nucleus | 25.67 | 34.06 |
| CDY27611 | Canola | nucleus | 25.46 | 33.97 |
| CDX84928 | Canola | nucleus | 25.26 | 33.79 |
| Bra032822.1-P | Field mustard | nucleus | 25.26 | 33.7 |
| AT5G43270.1 | Thale cress | nucleus | 28.95 | 33.65 |
| Bra030040.1-P | Field mustard | nucleus | 26.69 | 33.33 |
| AT1G27370.1 | Thale cress | nucleus | 26.9 | 33.08 |
| CDY15713 | Canola | nucleus | 26.49 | 33.08 |
| Solyc04g045560.2.1 | Tomato | nucleus | 23.61 | 32.86 |
| CDY15712 | Canola | nucleus | 25.05 | 32.62 |
| Bra030041.1-P | Field mustard | nucleus | 24.85 | 32.35 |
| CDY03914 | Canola | nucleus | 24.64 | 32.26 |
| GSMUA_Achr4P23650_001 | Banana | nucleus | 12.32 | 32.09 |
| CDY67700 | Canola | nucleus | 22.79 | 32.08 |
| CDY11816 | Canola | nucleus | 24.02 | 32.05 |
| Bra010949.1-P | Field mustard | nucleus | 23.41 | 31.15 |
| CDY22356 | Canola | nucleus | 33.06 | 31.02 |
| GSMUA_Achr4P03880_001 | Banana | nucleus | 18.07 | 30.88 |
| CDY47812 | Canola | nucleus | 32.44 | 30.62 |
| AT1G27360.1 | Thale cress | nucleus | 24.64 | 30.53 |
| GSMUA_Achr1P08440_001 | Banana | nucleus | 11.5 | 29.95 |
| GSMUA_Achr2P03070_001 | Banana | nucleus | 12.32 | 27.91 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 14.58 | 27.84 |
| GSMUA_Achr10P... | Banana | nucleus | 12.94 | 27.63 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 15.2 | 27.21 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 14.99 | 26.64 |
| GSMUA_Achr7P20510_001 | Banana | nucleus | 18.48 | 26.39 |
| GSMUA_Achr7P22940_001 | Banana | nucleus, vacuole | 17.04 | 26.02 |
| GSMUA_Achr8P25550_001 | Banana | nucleus | 17.66 | 25.0 |
| GSMUA_Achr9P27660_001 | Banana | nucleus | 18.89 | 24.93 |
| GSMUA_Achr7P02020_001 | Banana | nucleus | 17.45 | 24.57 |
| GSMUA_Achr9P22260_001 | Banana | nucleus | 17.04 | 24.2 |
| GSMUA_Achr2P11940_001 | Banana | nucleus | 15.61 | 23.9 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.25 | 23.8 |
| GSMUA_Achr4P01450_001 | Banana | nucleus | 17.25 | 23.53 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.86 | 23.39 |
| GSMUA_Achr4P16050_001 | Banana | nucleus | 17.25 | 23.33 |
| GSMUA_Achr9P01380_001 | Banana | nucleus | 17.45 | 22.79 |
| GSMUA_AchrUn_... | Banana | nucleus | 15.81 | 22.0 |
| GSMUA_Achr4P24610_001 | Banana | nucleus | 14.58 | 21.65 |
| GSMUA_Achr2P06150_001 | Banana | nucleus | 17.45 | 21.63 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 15.61 | 21.47 |
| GSMUA_Achr6P06030_001 | Banana | nucleus | 16.22 | 21.41 |
| GSMUA_Achr3P11170_001 | Banana | nucleus | 17.04 | 21.39 |
| GSMUA_Achr5P13440_001 | Banana | mitochondrion, nucleus | 12.73 | 21.31 |
| GSMUA_Achr6P22280_001 | Banana | nucleus | 17.86 | 21.17 |
| GSMUA_Achr5P25090_001 | Banana | nucleus | 17.86 | 21.07 |
| GSMUA_Achr11P... | Banana | nucleus | 17.45 | 20.48 |
| GSMUA_Achr4P26940_001 | Banana | nucleus | 14.58 | 20.46 |
| GSMUA_Achr9P20220_001 | Banana | nucleus | 10.27 | 20.33 |
| GSMUA_Achr9P29330_001 | Banana | nucleus | 15.61 | 19.9 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr10G23280_001 |
| EnsemblPlants:GSMUA_Achr10P23280_001 | EnsemblPlants:GSMUA_Achr10T23280_001 | InterPro:IPR004333 | InterPro:IPR036893 | UniProt:M0RKQ3 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF24 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI000294E0ED | SEG:seg | : | : | : | : |
Description
Putative Squamosa promoter-binding-like protein 12 [Source:GMGC_GENE;Acc:GSMUA_Achr10G23280_001]
Coordinates
chr10:+:28102319..28108300
Molecular Weight (calculated)
53929.4 Da
IEP (calculated)
9.351
GRAVY (calculated)
-0.591
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MNEAPIYNPD DSYHLFLPSL TKPCAGPTRV RKWRKGQHLS ASVSCSMDLT SKIPFHRDWE NFSLFSRKEG EISKPAQRCE WEVVDNHGSY GNGNGSVYSS
101: VGGLGPGSDL GNGSSRSSIS SSIGFPSKAG TGALRFIIDS VEKPPEILKV NKDLAMVETG ILHKVVAVEG PKEPRTQLKL GKRTYFEGGI HSTNSSSLAS
201: TNPSIGLVKK PKVSQQNMQS SHCQVEGCHV DLSAVKDYHR KHRVCEGHSK SPKVIVAGQT CRFCQQCSRF HDLSEFDQKK RSCRRRLFDH NARRRKPQPE
301: TIKFGSSVFS ASYYDDRQQM NLMFGRDPFN HVTNMANSTW DDSGGFKLIP SQGRWINFGN SGDINEQLHF PSNGISKNVS RVNHDWDGLL PFKGTNAEAT
401: NKGPGAPVFA SNLDGALDLQ RALSLLSTES WVPYQEPISD FQSVNANIIT SHSAIHPTNA TTVSWQKTEL LLPRPSLFNL QNHVSQI
101: VGGLGPGSDL GNGSSRSSIS SSIGFPSKAG TGALRFIIDS VEKPPEILKV NKDLAMVETG ILHKVVAVEG PKEPRTQLKL GKRTYFEGGI HSTNSSSLAS
201: TNPSIGLVKK PKVSQQNMQS SHCQVEGCHV DLSAVKDYHR KHRVCEGHSK SPKVIVAGQT CRFCQQCSRF HDLSEFDQKK RSCRRRLFDH NARRRKPQPE
301: TIKFGSSVFS ASYYDDRQQM NLMFGRDPFN HVTNMANSTW DDSGGFKLIP SQGRWINFGN SGDINEQLHF PSNGISKNVS RVNHDWDGLL PFKGTNAEAT
401: NKGPGAPVFA SNLDGALDLQ RALSLLSTES WVPYQEPISD FQSVNANIIT SHSAIHPTNA TTVSWQKTEL LLPRPSLFNL QNHVSQI
001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
Arabidopsis Description
SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.