Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g045560.2.1 | Tomato | nucleus | 69.87 | 76.86 |
| PGSC0003DMT400084734 | Potato | nucleus | 51.95 | 43.01 |
| PGSC0003DMT400076399 | Potato | nucleus | 14.03 | 39.71 |
| PGSC0003DMT400058753 | Potato | nucleus | 12.99 | 37.04 |
| Os02t0139400-01 | Rice | nucleus | 26.75 | 36.52 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 31.95 | 35.14 |
| VIT_01s0010g03710.t01 | Wine grape | nucleus | 43.12 | 34.8 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 30.65 | 34.1 |
| PGSC0003DMT400085174 | Potato | nucleus | 11.69 | 33.83 |
| Os02t0174100-02 | Rice | nucleus | 21.56 | 33.07 |
| GSMUA_Achr9P14160_001 | Banana | nucleus | 38.96 | 32.75 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 35.06 | 32.45 |
| TraesCS6B01G183400.1 | Wheat | nucleus | 27.53 | 32.42 |
| TraesCS6A01G155300.1 | Wheat | nucleus | 27.53 | 32.32 |
| Bra027478.1-P | Field mustard | nucleus | 32.73 | 32.31 |
| CDY32959 | Canola | nucleus | 32.73 | 32.31 |
| TraesCS6D01G145200.1 | Wheat | nucleus | 27.01 | 32.0 |
| HORVU6Hr1G031450.6 | Barley | nucleus | 27.01 | 31.9 |
| Bra033671.1-P | Field mustard | nucleus | 29.87 | 31.77 |
| Zm00001d053775_P001 | Maize | nucleus | 27.27 | 31.72 |
| CDY43604 | Canola | nucleus | 31.69 | 31.69 |
| PGSC0003DMT400082789 | Potato | nucleus | 13.51 | 31.52 |
| EES04609 | Sorghum | nucleus | 27.53 | 31.45 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 35.06 | 30.82 |
| Zm00001d015410_P002 | Maize | nucleus | 26.49 | 30.72 |
| OQU77017 | Sorghum | nucleus | 34.81 | 30.45 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 36.62 | 30.39 |
| Os06t0703500-02 | Rice | nucleus | 36.88 | 29.89 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 35.06 | 29.74 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 36.1 | 29.64 |
| AT5G43270.1 | Thale cress | nucleus | 31.95 | 29.36 |
| TraesCS6D01G098500.1 | Wheat | nucleus | 35.84 | 29.18 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 35.84 | 29.18 |
| Zm00001d014698_P001 | Maize | nucleus | 33.25 | 29.16 |
| TraesCS6A01G110100.2 | Wheat | nucleus | 35.84 | 29.05 |
| EES04495 | Sorghum | nucleus | 35.32 | 28.33 |
| GSMUA_Achr10P... | Banana | nucleus | 36.88 | 28.17 |
| HORVU6Hr1G019700.3 | Barley | nucleus | 36.62 | 27.81 |
| GSMUA_Achr10P... | Banana | nucleus | 34.81 | 27.52 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 30.91 | 27.48 |
| Os06t0663500-00 | Rice | nucleus | 24.16 | 27.11 |
| CDY22356 | Canola | nucleus | 34.55 | 25.63 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 35.32 | 25.61 |
| Zm00001d053890_P003 | Maize | nucleus | 31.43 | 25.1 |
| CDY47812 | Canola | nucleus | 32.99 | 24.61 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 33.51 | 24.48 |
| PGSC0003DMT400056374 | Potato | nucleus | 19.74 | 23.82 |
| PGSC0003DMT400029751 | Potato | nucleus | 21.04 | 21.77 |
| PGSC0003DMT400074976 | Potato | nucleus | 16.36 | 21.5 |
| PGSC0003DMT400066955 | Potato | nucleus | 16.36 | 20.86 |
| PGSC0003DMT400059813 | Potato | nucleus | 17.92 | 15.13 |
| PGSC0003DMT400072745 | Potato | nucleus | 21.56 | 14.87 |
| PGSC0003DMT400063046 | Potato | nucleus | 16.1 | 12.02 |
Protein Annotations
| EntrezGene:102605918 | MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 |
| InterPro:IPR004333 | InterPro:IPR036893 | UniProt:M1CJG1 | PFAM:PF03110 | EnsemblPlantsGene:PGSC0003DMG400026736 | PGSC:PGSC0003DMG400026736 |
| EnsemblPlants:PGSC0003DMT400068752 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF30 | InterPro:SBP_dom | InterPro:SBP_sf |
| SUPFAM:SSF103612 | UniParc:UPI000294AFB6 | RefSeq:XP_006341862.1 | SEG:seg | : | : |
Description
LIGULELESS1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026736]
Coordinates
chr4:+:36277845..36284911
Molecular Weight (calculated)
43242.6 Da
IEP (calculated)
7.596
GRAVY (calculated)
-0.571
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MECNVKWMMF GSKDPKTDSG SFNFSGFDTV GVYDFDDVDP TSDSKPSNFT FHVEKSIVKL STTSPPMDAY DGPFKLGKRT FESNSGESSV DLPSFSISPI
101: SSLIAPKKTK FSTHNPLIPH CQVDACNLDL SSAKEYHRKH RVCHTHSKCP KVIILGVERR FCQQCSRFHS LSDFDENKRS CRRRLSDHNA RRRKPQQETI
201: QFNSTRLSSL FYDNRQSMNL VFNNDPLVHS KPTADSTWET SEVSKFTLTR GLTLKPYKAD SINGQSLVGG VKLSGTTEMR NNASNLYSVS NGTTAEVLSQ
301: GVKETTFSLN MGVAPELPRA LSLLSNENEF ISIGHSTHVN QIIIPEQVMH AIPQSLPFES TEHWQAETTS IQSTHSYFGC EWSQW
101: SSLIAPKKTK FSTHNPLIPH CQVDACNLDL SSAKEYHRKH RVCHTHSKCP KVIILGVERR FCQQCSRFHS LSDFDENKRS CRRRLSDHNA RRRKPQQETI
201: QFNSTRLSSL FYDNRQSMNL VFNNDPLVHS KPTADSTWET SEVSKFTLTR GLTLKPYKAD SINGQSLVGG VKLSGTTEMR NNASNLYSVS NGTTAEVLSQ
301: GVKETTFSLN MGVAPELPRA LSLLSNENEF ISIGHSTHVN QIIIPEQVMH AIPQSLPFES TEHWQAETTS IQSTHSYFGC EWSQW
001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
Arabidopsis Description
SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.