CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27360.1	EER93592	AT1G14920.1	22942378
AT1G27360.1	EER93592	AT2G01570.1	22942378
AT1G27370.1	EER93592	AT1G14920.1	22942378

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015233_P001	Maize	mitochondrion, nucleus, plastid	80.42	72.69
Zm00001d053890_P003	Maize	nucleus	68.12	67.84
Os02t0139400-01	Rice	nucleus	39.79	67.73
TraesCS6B01G138400.1	Wheat	nucleus	62.92	63.85
TraesCS6D01G098500.1	Wheat	nucleus	62.5	63.42
TraesCS6A01G110100.2	Wheat	nucleus	61.88	62.53
HORVU6Hr1G019700.3	Barley	nucleus	64.17	60.75
OQU77017	Sorghum	nucleus	49.79	54.32
GSMUA_Achr5P21990_001	Banana	nucleus	37.08	41.11
VIT_01s0010g03710.t01	Wine grape	nucleus	38.54	38.78
VIT_11s0065g00170.t01	Wine grape	nucleus	36.25	37.42
PGSC0003DMT400084734	Potato	nucleus	35.62	36.77
Solyc05g015510.2.1	Tomato	nucleus	35.21	36.5
KRG97402	Soybean	nucleus	32.92	36.49
KRH31506	Soybean	nucleus	33.54	36.34
Bra033671.1-P	Field mustard	nucleus	27.08	35.91
CDY43604	Canola	nucleus	28.54	35.58
CDY03913	Canola	nucleus	27.5	35.58
Solyc04g045560.2.1	Tomato	nucleus	25.83	35.43
PGSC0003DMT400068752	Potato	nucleus	28.33	35.32
EES04609	Sorghum	nucleus	24.79	35.31
CDY32959	Canola	nucleus	28.54	35.13
Bra027478.1-P	Field mustard	nucleus	28.54	35.13
CDY27611	Canola	nucleus	26.67	35.07
Bra032822.1-P	Field mustard	nucleus	26.67	35.07
Bra032823.1-P	Field mustard	nucleus	23.96	35.06
CDX84928	Canola	nucleus	26.46	34.89
CDY27612	Canola	nucleus	23.75	34.65
AT1G27370.1	Thale cress	nucleus	28.54	34.6
AT5G43270.1	Thale cress	nucleus	29.79	34.13
Bra030040.1-P	Field mustard	nucleus	27.5	33.85
AT1G27360.1	Thale cress	nucleus	27.71	33.84
CDY15713	Canola	nucleus	27.29	33.59
CDY67700	Canola	nucleus	23.54	32.66
CDY03914	Canola	nucleus	25.21	32.53
CDX84927	Canola	nucleus	24.79	32.43
Bra030041.1-P	Field mustard	nucleus	24.79	31.82
CDY15712	Canola	nucleus	24.79	31.82
Bra010949.1-P	Field mustard	nucleus	24.17	31.69
CDY11816	Canola	nucleus	23.96	31.51
CDY22356	Canola	nucleus	30.62	28.32
CDY47812	Canola	nucleus	30.21	28.1
EER97257	Sorghum	nucleus	12.5	27.91
KXG36284	Sorghum	nucleus	11.67	25.69
EER99092	Sorghum	nucleus	19.17	23.71
EES11579	Sorghum	nucleus	18.54	22.25
EES11232	Sorghum	nucleus	18.33	21.05
KXG25534	Sorghum	nucleus	19.58	20.61
EES01979	Sorghum	nucleus	17.29	20.6
EES14266	Sorghum	nucleus	17.29	20.29
EER97011	Sorghum	nucleus	19.38	20.04
EER88765	Sorghum	nucleus	17.29	18.69
OQU84482	Sorghum	nucleus	15.42	16.63

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	UniProt:C5XUJ3	EnsemblPlants:EES04495	ProteinID:EES04495	ProteinID:EES04495.2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	ProteinID:OQU84346.1
PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF24	InterPro:SBP_dom	InterPro:SBP_sf
EnsemblPlantsGene:SORBI_3004G036900	SUPFAM:SSF103612	UniParc:UPI0007F29306	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:2961770..2966473

Molecular Weight (calculated)

51407.6 Da

IEP (calculated)

8.919

GRAVY (calculated)

-0.598

Length

480 amino acids

Sequence
(BLAST)

001: MGSFGMDWNQ KASVLWDWEN LPPIGANMSD NPRMTAAPQG EAKFAGLEAT RHESVHSSCG TFSSSSEMGY GSSKSSVSAS TDSSPKAKGN SMELNFAPAK
101: APDKNTDSGK VDDARTSPSS VIAISSGEPV LSLKLGKRTY FEDVCGGQSV KSLPSDTSAV TPLASAKKAK SAPNTQKSYC QVEGCKVDLS SAKEYHRKHK
201: VCEPHSKASK VVVAGLERRF CQQCSRFHGL SEFDQKKKSC RRRLNDHNAR RRKPQPEAFS FGSSRLSTMF YDTRQQTNLP FGQGPYGQMR SCANSSWDNP
301: VGGFKFAETK APWLRAAGVD GLHLSSQQVW NNFMPHGVHQ DFDGFTAFKE TSAKVLDQGA EASAVVSNPD GAPDLQRALS LLSNSSAGAG TNQQPTAQLH
401: HHHAGLSTLA ASSSSVMQAS SPGLWQDSSG TALGHHAHAR FQALDAPGSG AAIATAQELL QLPRSPSLYD SSSSHYDLMR

Best Arabidopsis Sequence Match ( AT5G43270.2 )
(BLAST)

001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN

Arabidopsis Description

SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.