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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra013973.1-P
Bra017443.1-P
Bra024875.1-P
Bra031991.1-P
Bra039762.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G27360.1 Bra039762.1-P AT1G66350.1 22942378
AT1G27360.1 Bra017443.1-P AT2G01570.1 22942378
AT1G27360.1 Bra024875.1-P AT2G01570.1 22942378
AT1G27360.1 Bra031991.1-P AT3G03450.1 22942378
AT1G27360.1 Bra013973.1-P AT5G17490.1 22942378
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY67700 Canola nucleus 94.54 100.0
CDY11816 Canola nucleus 95.36 95.62
Bra032823.1-P Field mustard nucleus 65.3 72.87
Bra030041.1-P Field mustard nucleus 74.32 72.73
Bra030040.1-P Field mustard nucleus 70.49 66.15
Bra032822.1-P Field mustard nucleus 65.03 65.21
AT1G27360.1 Thale cress nucleus 69.67 64.89
Bra005470.1-P Field mustard nucleus 14.21 36.62
Os02t0139400-01 Rice nucleus 27.6 35.82
Bra021880.1-P Field mustard nucleus 12.84 33.33
Bra032662.1-P Field mustard nucleus 14.21 32.91
Bra033671.1-P Field mustard nucleus 32.24 32.6
Bra027478.1-P Field mustard nucleus 33.61 31.54
KRG97402 Soybean nucleus 36.89 31.18
Os02t0174100-02 Rice nucleus 20.77 30.28
KRH31506 Soybean nucleus 36.61 30.25
Bra021094.1-P Field mustard nucleus 14.48 30.11
Bra027265.1-P Field mustard nucleus 14.48 29.61
Bra039656.1-P Field mustard nucleus 13.93 28.33
VIT_11s0065g00170.t01 Wine grape nucleus 35.25 27.74
GSMUA_Achr4P05720_001 Banana nucleus 25.96 27.46
Bra038101.1-P Field mustard nucleus 13.66 27.32
GSMUA_Achr9P23140_001 Banana nucleus 30.87 27.16
GSMUA_Achr4P12470_001 Banana nucleus 25.96 27.14
GSMUA_Achr9P14160_001 Banana nucleus 33.61 26.86
GSMUA_Achr5P22630_001 Banana nucleus 32.79 26.43
GSMUA_Achr6P36010_001 Banana nucleus 31.42 26.26
TraesCS6A01G155300.1 Wheat nucleus 23.22 25.91
TraesCS6D01G145200.1 Wheat nucleus 22.95 25.85
HORVU6Hr1G031450.6 Barley nucleus 22.95 25.77
TraesCS6B01G183400.1 Wheat nucleus 22.95 25.69
Zm00001d015410_P002 Maize nucleus 22.95 25.3
GSMUA_Achr3P05360_001 Banana nucleus 31.97 25.22
GSMUA_Achr3P27750_001 Banana nucleus 32.24 25.16
Zm00001d053775_P001 Maize nucleus 22.68 25.08
OQU77017 Sorghum nucleus 30.05 25.0
EES04609 Sorghum nucleus 22.95 24.93
Zm00001d014698_P001 Maize nucleus 29.78 24.83
TraesCS6B01G138400.1 Wheat nucleus 31.97 24.74
TraesCS6D01G098500.1 Wheat nucleus 31.97 24.74
GSMUA_Achr5P21990_001 Banana nucleus 29.23 24.71
Os06t0703500-02 Rice nucleus 31.42 24.21
TraesCS6A01G110100.2 Wheat nucleus 31.42 24.21
EES04495 Sorghum nucleus 31.69 24.17
Os06t0663500-00 Rice nucleus 22.13 23.62
GSMUA_Achr10P... Banana nucleus 32.51 23.61
GSMUA_Achr10P... Banana nucleus 31.15 23.41
HORVU6Hr1G019700.3 Barley nucleus 32.24 23.27
Bra004363.1-P Field mustard nucleus 18.58 22.59
Zm00001d015233_P001 Maize mitochondrion, nucleus, plastid 31.97 22.03
Zm00001d053890_P003 Maize nucleus 28.69 21.78
Bra038324.1-P Field mustard nucleus 19.4 21.78
Bra033221.1-P Field mustard nucleus 19.4 21.65
Bra016891.1-P Field mustard nucleus 21.04 21.21
GSMUA_Achr8P23820_001 Banana nucleus 30.33 21.06
Bra022766.1-P Field mustard nucleus 19.67 21.05
Bra003305.1-P Field mustard nucleus 18.03 20.89
Bra004674.1-P Field mustard nucleus 20.77 20.6
Bra014599.1-P Field mustard nucleus 16.94 20.53
Protein Annotations
MapMan:15.5.18Gene3D:4.10.1100.10EnsemblPlantsGene:Bra010949EnsemblPlants:Bra010949.1EnsemblPlants:Bra010949.1-PGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0046872InterPro:IPR004333InterPro:IPR036893UniProt:M4D395PFAM:PF03110
PFscan:PS51141PANTHER:PTHR31251PANTHER:PTHR31251:SF62InterPro:SBP_domInterPro:SBP_sfSUPFAM:SSF103612
UniParc:UPI0002545A68SEG:seg::::
Description
AT1G27370 (E=2e-129) | squamosa promoter-binding protein-like 10 (SPL10)
Coordinates
chrA08:+:17236439..17237875
Molecular Weight (calculated)
41015.3 Da
IEP (calculated)
6.441
GRAVY (calculated)
-0.863
Length
366 amino acids
Sequence
(BLAST)
001: MDCNMASPTW DWDHLIMSNP SKTENDENQQ PSAEWEIEKG EGIESMLFPC FDGLEKVSSG SPSGFWHSQS TSTNSSSPKV KQTNLASESS PGDSCSNVDS
101: VQVKASTAAE SDLCLELGKQ TYSEEFWCRD NNDLQAVSMN ARKKQSVQVP RCQIDGCELD LSSAKDYHRK HRVCDNHSKC PKVTVGGLER RFCQQCSRLH
201: AVSEFDEKKR SCRKRLTHHN ARRRKLPGMF PLNPERVCNP RQHTNMLWNE LSLNTESEET FAWDTTYDTK PTQIESGFTL SFQRGHGRPD EQVVAGSSRS
301: FSPYQTSGGF QLPSKGVGEY SGGLNESQDF YSALSLLSTS SDSRGTKHNP MVESQPIHGT FPTHFM
Best Arabidopsis Sequence Match ( AT1G27370.1 )
(BLAST)
001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
Arabidopsis Description
SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.