Factsheet for Bra013973.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001477.1-P
Bra010794.1-P	nucleus
Bra012532.1-P
Bra013423.1-P
Bra025713.1-P	nucleus
Bra027588.1-P
Bra028364.1-P
Bra032362.1-P	nucleus
Bra034718.1-P
Bra035092.1-P
Bra039354.1-P
Bra039533.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17490.1	Bra025713.1-P	AT1G19180.1	22892320
AT5G17490.1	Bra025713.1-P	AT1G19180.1	22892320
AT5G17490.1	Bra010794.1-P	AT1G30135.1	22892320
AT5G17490.1	Bra032362.1-P	AT1G30135.1	22892320
AT5G17490.1	Bra010794.1-P	AT1G30135.1	22892320
AT5G17490.1	Bra032362.1-P	AT1G30135.1	22892320
AT5G17490.1	Bra035092.1-P	AT1G79110.1	23482857
AT5G17490.1	Bra001477.1-P	AT3G12920.1	23482857
AT5G17490.1	Bra034718.1-P	AT3G12920.1	23482857
AT5G17490.1	Bra039354.1-P	AT3G12920.1	23482857
AT5G17490.1	Bra012532.1-P	AT4G19700.1	23482857
AT5G17490.1	Bra013423.1-P	AT4G19700.1	23482857
AT5G17490.1	Bra027588.1-P	AT5G45100.1	23482857
AT5G17490.1	Bra028364.1-P	AT5G45100.1	23482857
AT5G17490.1	Bra039533.1-P	AT5G45100.1	23482857

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38434	Canola	cytosol	95.62	98.43
AT5G17490.1	Thale cress	cytosol	83.62	83.94
Bra031991.1-P	Field mustard	cytosol, nucleus, plastid	62.86	65.35
Bra039762.1-P	Field mustard	cytosol	59.43	63.93
VIT_14s0006g00640.t01	Wine grape	cytosol	62.1	57.29
KRG97933	Soybean	nucleus	63.05	56.68
KRH30942	Soybean	cytosol	62.86	55.46
Solyc11g011260.1.1	Tomato	nucleus	59.62	53.23
Bra024875.1-P	Field mustard	nucleus	58.1	53.23
PGSC0003DMT400040589	Potato	nucleus	59.43	53.06
Bra017443.1-P	Field mustard	cytosol	52.38	50.27
Bra007056.1-P	Field mustard	mitochondrion, plastid	22.48	37.34
Bra025456.1-P	Field mustard	mitochondrion	16.95	36.18
Bra012102.1-P	Field mustard	cytosol	10.29	32.14
Bra014251.1-P	Field mustard	cytosol	26.48	31.24
Bra018848.1-P	Field mustard	cytosol	25.71	30.68
Bra038002.1-P	Field mustard	nucleus, plastid	23.62	27.99
Bra026999.1-P	Field mustard	nucleus, plastid	25.71	22.39
Bra027620.1-P	Field mustard	plastid	26.67	22.15

Protein Annotations

Gene3D:1.10.10.1290	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.6.2.1	EnsemblPlantsGene:Bra013973	EnsemblPlants:Bra013973.1
EnsemblPlants:Bra013973.1-P	InterPro:DELLA_N_sf	GO:GO:0000989	GO:GO:0003674	GO:GO:0003712	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009739	GO:GO:0009987
InterPro:IPR005202	InterPro:IPR038088	UniProt:M4DBW3	PFAM:PF03514	PFAM:PF12041	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF47	SMART:SM01129	InterPro:TF_DELLA	InterPro:TF_DELLA_N	InterPro:TF_GRAS
UniParc:UPI0002547074	SEG:seg	:	:	:	:

Description

AT5G17490 (E=7e-228) RGL3 | RGL3 (RGA-LIKE PROTEIN 3); transcription factor

Coordinates

chrA08:-:4914233..4915810

Molecular Weight (calculated)

57664.2 Da

IEP (calculated)

4.572

GRAVY (calculated)

-0.189

Length

525 amino acids

Sequence
(BLAST)

001: MKRSHQETSV EEVHSMGKKL EDDNNMDEFL SALGYKVRSS DMADVAQKLE QLEVVLSNDD VLGSNALNDT VHYNPSDLSS WAETMLSELN YYPPSLDLDP
101: TRICNLTPFS DDNECSSTTS DNSSKRIRLG PWCDSSESTR PVVMLGVDSQ ETGVRLVQAL VACAEAVHQE NLILADALVK RVGPLAASQA GAMGKVATYF
201: AEALARRIYR IRPSSPAVDP SFEEILQMHF YESCPYLKFA HFTANQAILE AVATARGVHV IDLGINQGMQ WPALMQALAL RPGGSPSFRL TGVGGPSEGD
301: GIQQLGWKLA QLAQAIGVEF EFKGLTVERL TDLEPEMFET RPESETLVVN SVFELHPLLA RPGSIEKLLA TVKAVKPSVV TVVEQEANHN GVVFLERFNE
401: ALHYYSSLFD SLEDGVIIPS QDRVMSEVYL GRQILNVVAA EGTDRIERHE TLDQWRKRLG SAGFDPVSLG SDAFKQASLL LALSGGGDGY RVEENDGSLM
501: LAWQTKPLIA ASAWKVSDVT AEWRR

Best Arabidopsis Sequence Match ( AT5G17490.1 )
(BLAST)

001: MKRSHQETSV EEEAPSMVEK LENGCGGGGD DNMDEFLAVL GYKVRSSDMA DVAQKLEQLE MVLSNDIASS SNAFNDTVHY NPSDLSGWAQ SMLSDLNYYP
101: DLDPNRICDL RPITDDDECC SSNSNSNKRI RLGPWCDSVT SESTRSVVLI EETGVRLVQA LVACAEAVQL ENLSLADALV KRVGLLAASQ AGAMGKVATY
201: FAEALARRIY RIHPSAAAID PSFEEILQMN FYDSCPYLKF AHFTANQAIL EAVTTSRVVH VIDLGLNQGM QWPALMQALA LRPGGPPSFR LTGVGNPSNR
301: EGIQELGWKL AQLAQAIGVE FKFNGLTTER LSDLEPDMFE TRTESETLVV NSVFELHPVL SQPGSIEKLL ATVKAVKPGL VTVVEQEANH NGDVFLDRFN
401: EALHYYSSLF DSLEDGVVIP SQDRVMSEVY LGRQILNLVA TEGSDRIERH ETLAQWRKRM GSAGFDPVNL GSDAFKQASL LLALSGGGDG YRVEENDGSL
501: MLAWQTKPLI AASAWKLAAE LRR

Arabidopsis Description

RGL3DELLA protein RGL3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF53]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.