Factsheet for Bra038002.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50028	Canola	nucleus, plastid	93.68	99.52
CDY54362	Canola	plastid	93.91	98.81
AT1G55580.1	Thale cress	plastid	88.26	87.87
VIT_19s0015g01930.t01	Wine grape	cytosol	51.92	55.69
Solyc07g066250.1.1	Tomato	nucleus	49.66	51.4
PGSC0003DMT400057265	Potato	nucleus, plastid	49.44	50.81
GSMUA_Achr1P19470_001	Banana	nucleus	42.21	48.83
GSMUA_AchrUn_...	Banana	cytosol	41.99	48.69
GSMUA_Achr1P09360_001	Banana	cytosol	40.41	48.51
GSMUA_Achr7P16880_001	Banana	cytosol	39.5	46.17
TraesCS6A01G159500.1	Wheat	cytosol	36.12	40.82
TraesCS6D01G153000.1	Wheat	cytosol	35.89	40.25
TraesCS6B01G191800.1	Wheat	cytosol	35.89	40.25
TraesCS7A01G382800.1	Wheat	cytosol	38.37	39.91
TraesCS7D01G379200.1	Wheat	cytosol	38.15	39.76
HORVU7Hr1G091000.1	Barley	cytosol	38.15	39.67
TraesCS7B01G285500.1	Wheat	cytosol	38.37	39.63
KXG29713	Sorghum	cytosol	35.44	39.55
Os06t0610350-01	Rice	cytosol	37.25	37.41
Bra025456.1-P	Field mustard	mitochondrion	20.54	36.99
Zm00001d046783_P001	Maize	mitochondrion	37.92	36.84
Bra007056.1-P	Field mustard	mitochondrion, plastid	25.96	36.39
Zm00001d015815_P001	Maize	cytosol	33.86	36.06
OQU76691	Sorghum	cytosol, extracellular	37.92	35.9
HORVU6Hr1G033280.1	Barley	cytosol	36.12	35.87
Os02t0197300-00	Rice	cytosol	35.67	35.43
Bra012102.1-P	Field mustard	cytosol	11.51	30.36
Bra018848.1-P	Field mustard	cytosol	28.67	28.86
Bra014251.1-P	Field mustard	cytosol	27.99	27.87
Bra039762.1-P	Field mustard	cytosol	28.67	26.02
Bra013973.1-P	Field mustard	cytosol	27.99	23.62
Bra031991.1-P	Field mustard	cytosol, nucleus, plastid	26.41	23.17
Bra024875.1-P	Field mustard	nucleus	27.99	21.64
Bra026999.1-P	Field mustard	nucleus, plastid	29.12	21.39
Bra017443.1-P	Field mustard	cytosol	25.06	20.29
Bra027620.1-P	Field mustard	plastid	28.89	20.25

Protein Annotations

MapMan:15.5.12	EnsemblPlantsGene:Bra038002	EnsemblPlants:Bra038002.1	EnsemblPlants:Bra038002.1-P	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0010223
GO:GO:0090506	InterPro:IPR005202	UniProt:M4FA88	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF2	InterPro:Scarecrow-like_18/MOC1	InterPro:TF_GRAS	UniParc:UPI000253EE31	SEG:seg	:

Description

AT1G55580 (E=3e-180) LAS, SCL18 | LAS (Lateral Suppressor); transcription factor

Coordinates

chrA06:-:170174..171505

Molecular Weight (calculated)

49281.4 Da

IEP (calculated)

6.629

GRAVY (calculated)

-0.156

Length

443 amino acids

Sequence
(BLAST)

001: MLASFKSSSS SSEDATENPP PPPPPPLCLA SSSAATSAAH HLRRLLFTAA DFISQSNVSA AQNILSILSS NSSPYGDSTE RLVHLFTKAL SVRIGLSENA
101: ATWTANEMAS SSTVFTSSVC KEQFLFRTKN NNNSDLESCY YLWLNQLTPF IRFSHLTANQ AILDATETNN GNGALHILDL DISQGLQWPP LMQALAERSS
201: SNPSSTPPPS LRITGCGRDV TVLNRTGDRL TRFANSLGLQ FQFHTLVIAE EDLAGLLLQI RLLALSAVQG ESIAVNCVHF LHRFFNDDGD MIGHFLSAIK
301: SLNPRIVTMA EREANHGDPS FLNRFSEALD HFMAIFDSLE ATLPPNSRER LTLEQRWFGM EILDVVAAEA AERKQRHRRF EVWEEMMKRH GFANVPIGSF
401: AFSQAKLLLR LHYPSEGYNL QFLNDSLFLG WKNRLLFSVS SWK

Best Arabidopsis Sequence Match ( AT1G55580.1 )
(BLAST)

001: MLTSFKSSSS SSEDATATTT ENPPPLCIAS SSAATSASHH LRRLLFTAAN FVSQSNFTAA QNLLSILSLN SSPHGDSTER LVHLFTKALS VRINRQQQDQ
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK

Arabidopsis Description

SCL18SCL18 [Source:UniProtKB/TrEMBL;Acc:A0A178WEV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.