Factsheet for Solyc07g066250.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057265	Potato	nucleus, plastid	98.83	98.14
VIT_19s0015g01930.t01	Wine grape	cytosol	66.82	69.25
GSMUA_AchrUn_...	Banana	cytosol	51.17	57.33
GSMUA_Achr1P19470_001	Banana	nucleus	50.23	56.14
GSMUA_Achr1P09360_001	Banana	cytosol	47.66	55.28
CDY50028	Canola	nucleus, plastid	51.17	52.52
GSMUA_Achr7P16880_001	Banana	cytosol	46.26	52.24
CDY54362	Canola	plastid	50.93	51.78
AT1G55580.1	Thale cress	plastid	51.87	49.89
Bra038002.1-P	Field mustard	nucleus, plastid	51.4	49.66
TraesCS6A01G159500.1	Wheat	cytosol	41.12	44.9
TraesCS6D01G153000.1	Wheat	cytosol	41.36	44.81
KXG29713	Sorghum	cytosol	40.89	44.08
TraesCS6B01G191800.1	Wheat	cytosol	40.65	44.05
TraesCS7A01G382800.1	Wheat	cytosol	42.29	42.49
HORVU7Hr1G091000.1	Barley	cytosol	42.06	42.25
TraesCS7D01G379200.1	Wheat	cytosol	41.82	42.12
TraesCS7B01G285500.1	Wheat	cytosol	42.06	41.96
Zm00001d015815_P001	Maize	cytosol	39.95	41.11
Os06t0610350-01	Rice	cytosol	41.36	40.14
Zm00001d046783_P001	Maize	mitochondrion	41.59	39.04
HORVU6Hr1G033280.1	Barley	cytosol	40.65	39.01
Os02t0197300-00	Rice	cytosol	39.95	38.34
OQU76691	Sorghum	cytosol, extracellular	41.82	38.25
Solyc07g043330.1.1	Tomato	plastid	30.14	29.86
Solyc12g099900.1.1	Tomato	nucleus	29.21	26.71
Solyc01g008910.2.1	Tomato	cytosol	29.67	26.68
Solyc09g066450.1.1	Tomato	cytosol	28.97	24.8
Solyc10g086380.1.1	Tomato	nucleus	28.97	24.17
Solyc11g017100.1.1	Tomato	cytosol	26.4	23.74
Solyc03g110950.1.1	Tomato	cytosol	28.74	23.21
Solyc10g086370.1.1	Tomato	nucleus	27.34	22.94
Solyc11g011260.1.1	Tomato	nucleus	31.31	22.79
Solyc02g085340.1.1	Tomato	cytosol	32.24	22.66
Solyc02g094340.1.1	Tomato	nucleus	35.28	22.21
Solyc08g080400.1.1	Tomato	plastid	32.71	20.62
Solyc10g074680.1.1	Tomato	cytosol	31.78	16.46

Protein Annotations

MapMan:15.5.12	EMBL:AF098674	ProteinID:CAC36399.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0010223	GO:GO:0043565	InterPro:IPR005202
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF2	UniProt:Q9ZSP2	InterPro:Scarecrow-like_18/MOC1
EnsemblPlantsGene:Solyc07g066250.1	EnsemblPlants:Solyc07g066250.1.1	InterPro:TF_GRAS	UniParc:UPI0000030325	SEG:seg	:

Description

Lateral suppressor [Source:UniProtKB/TrEMBL;Acc:Q9ZSP2]

Coordinates

chr7:+:67734548..67735834

Molecular Weight (calculated)

48522.6 Da

IEP (calculated)

7.605

GRAVY (calculated)

-0.270

Length

428 amino acids

Sequence
(BLAST)

001: MLGSFGSSSS QSHPHHDEES SDHHQQRRFT ATATTITTTT ITTSPAIQIR QLLISCAELI SQSDFSAAKR LLTILSTNSS PFGDSTERLV HQFTRALSLR
101: LNRYISSTTN HFMTPVETTP TDSSSSSSLA LIQSSYLSLN QVTPFIRFTQ LTANQAILEA INGNHQAIHI VDFDINHGVQ WPPLMQALAD RYPAPTLRIT
201: GTGNDLDTLR RTGDRLAKFA HSLGLRFQFH PLYIANNNHD HDEDPSIISS IVLLPDETLA INCVFYLHRL LKDREKLRIF LHRVKSMNPK IVTIAEKEAN
301: HNHPLFLQRF IEALDYYTAV FDSLEATLPP GSRERMTVEQ VWFGREIVDI VAMEGDKRKE RHERFRSWEV MLRSCGFSNV ALSPFALSQA KLLLRLHYPS
401: EGYQLGVSSN SFFLGWQNQP LFSISSWR

Best Arabidopsis Sequence Match ( AT1G55580.1 )
(BLAST)

001: MLTSFKSSSS SSEDATATTT ENPPPLCIAS SSAATSASHH LRRLLFTAAN FVSQSNFTAA QNLLSILSLN SSPHGDSTER LVHLFTKALS VRINRQQQDQ
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK

Arabidopsis Description

SCL18SCL18 [Source:UniProtKB/TrEMBL;Acc:A0A178WEV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.