Factsheet for Solyc02g085340.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66770.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT5G66770.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT5G66770.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT5G66770.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT5G66770.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT5G66770.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT5G66770.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT5G66770.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT5G66770.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT5G66770.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038574	Potato	cytosol	96.88	96.56
KRH29015	Soybean	cytosol	31.69	67.72
KRH24039	Soybean	cytosol	51.23	64.86
VIT_04s0023g01660.t01	Wine grape	cytosol	64.53	64.11
Bra012102.1-P	Field mustard	cytosol	17.24	62.5
AT5G66770.1	Thale cress	cytosol	59.11	61.64
CDY53846	Canola	cytosol	56.81	59.35
AT3G50650.1	Thale cress	cytosol	52.38	58.86
CDY72338	Canola	cytosol	56.49	58.8
GSMUA_Achr3P30530_001	Banana	cytosol	51.56	54.42
GSMUA_AchrUn_...	Banana	cytosol	46.96	53.46
Zm00001d033834_P001	Maize	cytosol, plastid	44.99	49.73
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	45.48	49.55
TraesCS4B01G054000.1	Wheat	cytosol	44.17	49.18
Zm00001d013385_P001	Maize	cytosol, plastid	45.81	49.03
GSMUA_Achr4P07320_001	Banana	cytosol	45.16	49.02
TraesCS4A01G260600.1	Wheat	cytosol	43.84	48.99
TraesCS4D01G054000.1	Wheat	cytosol	43.84	48.55
Os03t0723000-01	Rice	nucleus	45.32	47.75
HORVU4Hr1G008930.3	Barley	cytosol, mitochondrion	25.29	43.63
HORVU4Hr1G008980.3	Barley	mitochondrion, nucleus	35.3	38.88
Solyc07g066250.1.1	Tomato	nucleus	22.66	32.24
Solyc07g043330.1.1	Tomato	plastid	19.87	28.01
Solyc09g066450.1.1	Tomato	cytosol	21.84	26.6
Solyc12g099900.1.1	Tomato	nucleus	20.03	26.07
Solyc01g008910.2.1	Tomato	cytosol	20.36	26.05
Solyc11g017100.1.1	Tomato	cytosol	19.54	25.0
Solyc10g086380.1.1	Tomato	nucleus	20.2	23.98
Solyc02g094340.1.1	Tomato	nucleus	25.12	22.5
Solyc03g110950.1.1	Tomato	cytosol	19.54	22.45
Solyc11g011260.1.1	Tomato	nucleus	21.67	22.45
Solyc10g086370.1.1	Tomato	nucleus	18.39	21.96
Solyc08g080400.1.1	Tomato	plastid	22.99	20.62
Solyc10g074680.1.1	Tomato	cytosol	23.32	17.19

Protein Annotations

MapMan:15.5.12	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR005202	UniProt:K4BB46	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF65	EnsemblPlantsGene:Solyc02g085340.1	EnsemblPlants:Solyc02g085340.1.1	InterPro:TF_GRAS	UniParc:UPI0002769054	SEG:seg

Description

No Description!

Coordinates

chr2:-:48257032..48258861

Molecular Weight (calculated)

66536.3 Da

IEP (calculated)

4.670

GRAVY (calculated)

-0.262

Length

609 amino acids

Sequence
(BLAST)

001: MAYMCTDSGN LMAIAQQVIK QKQQQEQLQQ QEQQQQQQQQ FLGVNPLCLS PWTSNHQTLT NSPTLGYGLT GSGFADPFQV AGGTDSAEPG FQFPNLEHHS
101: TGFRFADFGG GPGGEFDSDE WMESLIGGGD STGSSNLQSG CEAWQTSSEF TTLYGDPFPS CPNRLSIGSA PPPPPSSDLN GVIFSETQKN LSPLQPQTSP
201: WVAPSSSPPP IVQPASKESK VVSVDVQPCS SPESFSSKPL LKSLVECARL AESEPENVVK SLIRLRESVS QQGDPMERVG FYFLEALYNR LSSCQAERTP
301: SIFGTAPEEL TLSYKAFNDA CPYSKFAHLT ANQAILEATE KATRIHIVDF GIVHGIQWAA FLQALATRSA GKPVSVRISG IPSVVLGNSP SASLLATGNR
401: LRDFAKLLDL NFEFEPILTP VQELNGSSFR VDPDEILAVN FMLQLYNLLD ETNVGVKTAL SLAKSLNPSI VTLGEYEVNL NDVGFLQRFK NALKYYSTIF
501: ESLDPSLTRD SAERVQVERL ILGRRIAGAV GLDDGGTRRE CMEDKEHWKE LMEGAGFKPV TLSHYAMSQA KILLWNYNYS SSFGLIDSAP GFLSLAWKDN
601: PLLTVSSWH

Best Arabidopsis Sequence Match ( AT5G66770.1 )
(BLAST)

001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR

Arabidopsis Description

SCL4Scarecrow-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.