Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G054000.1 | Wheat | cytosol | 97.25 | 96.36 |
| TraesCS4B01G054000.1 | Wheat | cytosol | 94.5 | 94.15 |
| Zm00001d033834_P001 | Maize | cytosol, plastid | 79.82 | 78.95 |
| KXG37683 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 80.92 | 78.89 |
| Zm00001d013385_P001 | Maize | cytosol, plastid | 82.02 | 78.56 |
| Os03t0723000-01 | Rice | nucleus | 81.28 | 76.64 |
| HORVU4Hr1G008980.3 | Barley | mitochondrion, nucleus | 67.71 | 66.73 |
| HORVU4Hr1G008930.3 | Barley | cytosol, mitochondrion | 42.94 | 66.29 |
| KRH29015 | Soybean | cytosol | 29.72 | 56.84 |
| Bra012102.1-P | Field mustard | cytosol | 16.51 | 53.57 |
| GSMUA_AchrUn_... | Banana | cytosol | 50.09 | 51.03 |
| GSMUA_Achr3P30530_001 | Banana | cytosol | 53.95 | 50.95 |
| KRH24039 | Soybean | cytosol | 44.22 | 50.1 |
| GSMUA_Achr4P07320_001 | Banana | cytosol | 49.54 | 48.13 |
| AT5G66770.1 | Thale cress | cytosol | 49.17 | 45.89 |
| AT3G50650.1 | Thale cress | cytosol | 45.5 | 45.76 |
| CDY53846 | Canola | cytosol | 47.71 | 44.6 |
| CDY72338 | Canola | cytosol | 47.34 | 44.1 |
| Solyc02g085340.1.1 | Tomato | cytosol | 48.99 | 43.84 |
| PGSC0003DMT400038574 | Potato | cytosol | 48.99 | 43.7 |
| VIT_04s0023g01660.t01 | Wine grape | cytosol | 48.44 | 43.07 |
| TraesCS6A01G159500.1 | Wheat | cytosol | 22.75 | 31.63 |
| TraesCS4A01G466700.1 | Wheat | cytosol, nucleus, peroxisome | 18.72 | 31.29 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 24.4 | 29.75 |
| TraesCS7A01G382800.1 | Wheat | cytosol | 22.94 | 29.34 |
| TraesCS5A01G511900.1 | Wheat | cytosol | 22.39 | 27.98 |
| TraesCS2A01G200700.1 | Wheat | cytosol | 22.75 | 27.56 |
| TraesCS3A01G233000.1 | Wheat | plasma membrane | 25.32 | 27.54 |
| TraesCS2A01G304000.1 | Wheat | cytosol, mitochondrion, nucleus | 22.57 | 25.62 |
| TraesCS1A01G413800.1 | Wheat | cytosol, nucleus, plastid | 22.57 | 25.52 |
| TraesCS1A01G304000.1 | Wheat | peroxisome | 22.02 | 24.44 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 19.27 | 24.42 |
| TraesCS3A01G392400.1 | Wheat | cytosol | 22.75 | 23.89 |
| TraesCS3A01G392600.1 | Wheat | cytosol | 20.55 | 23.43 |
| TraesCS4A01G191300.1 | Wheat | cytosol | 26.42 | 23.34 |
| TraesCS4A01G271000.1 | Wheat | cytosol | 26.05 | 22.9 |
| TraesCS3A01G392500.1 | Wheat | cytosol | 21.28 | 22.44 |
| TraesCS5A01G144000.1 | Wheat | plastid | 25.87 | 21.76 |
| TraesCS4A01G430600.1 | Wheat | plastid | 24.77 | 21.74 |
| TraesCS7A01G059000.1 | Wheat | plastid | 24.59 | 21.37 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 17.43 | 21.3 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 21.65 | 21.26 |
| TraesCS2A01G096800.1 | Wheat | nucleus | 26.05 | 19.86 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G260600.1 | EnsemblPlantsGene:TraesCS4A01G260600 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF65 |
| PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : | : |
Description
No Description!
Coordinates
chr4A:-:573172063..573173700
Molecular Weight (calculated)
58574.1 Da
IEP (calculated)
4.827
GRAVY (calculated)
-0.076
Length
545 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYMCADSGN LMAIAQQVIQ QQQQHNQQQQ RHHHHHHHLA PPPMPMPPAP APPHAQIPGS LPFGAAGSAA WPQGENFFSD VFGASAADAV FSDLAAGADF
101: DSDVWMESLI GDAPVFQDSD LDRLIFTTPP PAEAEAEAVA RDENAPAALP PVAATAQAAC SSPGSADASC SAPILQSLLA CSRAAAASPG LAAAELAKVR
201: AAATESGDPA ERVAFYFSDA LARRLACGGA AQLDTASDAR LASDEVTLCY KTLNDACPYS KFAHLTANQA ILEATGAATK IHIVDFGIVQ GIQWAALLQA
301: LATRPEGKPS RIRISGVPSP YLGPHPAASL AATSARLRDF AQLLGVDFEF VPLLRPVHEL DRSDFSVDPD EVVAVNFMLQ LYHLLGDSDE PVRRLLRLAK
401: SLGPAVVTLG EYEVSLNRAG FVDRFASALS YYRAVFESLD VAMARDSEDR ATLERSMFGE RIRRAVGPPE GADRTDRMAG SAEWQALMEW CGFQPVRLSN
501: YAESQAELLL WDYDAKYKYS LVQLPPAFLS LAWEKRPLLT VSAWR
101: DSDVWMESLI GDAPVFQDSD LDRLIFTTPP PAEAEAEAVA RDENAPAALP PVAATAQAAC SSPGSADASC SAPILQSLLA CSRAAAASPG LAAAELAKVR
201: AAATESGDPA ERVAFYFSDA LARRLACGGA AQLDTASDAR LASDEVTLCY KTLNDACPYS KFAHLTANQA ILEATGAATK IHIVDFGIVQ GIQWAALLQA
301: LATRPEGKPS RIRISGVPSP YLGPHPAASL AATSARLRDF AQLLGVDFEF VPLLRPVHEL DRSDFSVDPD EVVAVNFMLQ LYHLLGDSDE PVRRLLRLAK
401: SLGPAVVTLG EYEVSLNRAG FVDRFASALS YYRAVFESLD VAMARDSEDR ATLERSMFGE RIRRAVGPPE GADRTDRMAG SAEWQALMEW CGFQPVRLSN
501: YAESQAELLL WDYDAKYKYS LVQLPPAFLS LAWEKRPLLT VSAWR
001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR
Arabidopsis Description
SCL4Scarecrow-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL03]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.