Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH29015 | Soybean | cytosol | 35.42 | 67.37 |
| AT5G66770.1 | Thale cress | cytosol | 71.59 | 66.44 |
| KRH24039 | Soybean | cytosol | 54.43 | 61.33 |
| Solyc02g085340.1.1 | Tomato | cytosol | 58.86 | 52.38 |
| PGSC0003DMT400038574 | Potato | cytosol | 59.04 | 52.37 |
| VIT_04s0023g01660.t01 | Wine grape | cytosol | 57.56 | 50.9 |
| GSMUA_Achr3P30530_001 | Banana | cytosol | 52.4 | 49.22 |
| GSMUA_AchrUn_... | Banana | cytosol | 47.6 | 48.22 |
| TraesCS4B01G054000.1 | Wheat | cytosol | 46.49 | 46.07 |
| TraesCS4A01G260600.1 | Wheat | cytosol | 45.76 | 45.5 |
| TraesCS4D01G054000.1 | Wheat | cytosol | 46.13 | 45.45 |
| Zm00001d033834_P001 | Maize | cytosol, plastid | 45.2 | 44.46 |
| GSMUA_Achr4P07320_001 | Banana | cytosol | 45.76 | 44.21 |
| KXG37683 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 45.57 | 44.19 |
| Zm00001d013385_P001 | Maize | cytosol, plastid | 46.13 | 43.94 |
| Os03t0723000-01 | Rice | nucleus | 46.68 | 43.77 |
| HORVU4Hr1G008930.3 | Barley | cytosol, mitochondrion | 26.01 | 39.94 |
| HORVU4Hr1G008980.3 | Barley | mitochondrion, nucleus | 38.19 | 37.43 |
| AT5G41920.1 | Thale cress | cytosol | 21.4 | 28.64 |
| AT1G55580.1 | Thale cress | plastid | 23.43 | 28.54 |
| AT5G17490.1 | Thale cress | cytosol | 22.88 | 23.71 |
| AT1G50420.1 | Thale cress | cytosol | 20.85 | 23.44 |
| AT1G66350.1 | Thale cress | cytosol | 21.96 | 23.29 |
| AT3G03450.1 | Thale cress | nucleus | 23.25 | 23.03 |
| AT1G14920.1 | Thale cress | nucleus | 22.14 | 22.51 |
| AT1G63100.2 | Thale cress | plastid | 24.54 | 20.21 |
| AT2G01570.1 | Thale cress | mitochondrion, nucleus | 21.77 | 20.1 |
| AT3G54220.1 | Thale cress | nucleus, plastid | 23.06 | 19.14 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:824228 | UniProt:A0A178VIJ1 | EMBL:AB493643 | ProteinID:AEE78689.1 | EMBL:AF036304 |
| EMBL:AK229252 | ArrayExpress:AT3G50650 | EnsemblPlantsGene:AT3G50650 | RefSeq:AT3G50650 | TAIR:AT3G50650 | RefSeq:AT3G50650-TAIR-G |
| EnsemblPlants:AT3G50650.1 | TAIR:AT3G50650.1 | Unigene:At.42939 | UniProt:C0SVE0 | ProteinID:CAB62434.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:IPR005202 | RefSeq:NP_190634.1 | ProteinID:OAP06220.1 | PFAM:PF03514 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50985 | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF65 | UniProt:Q9SCR0 | InterPro:TF_GRAS | UniParc:UPI00000A0743 | SEG:seg | : |
Description
SCL7Uncharacterized protein At3g50650 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE0]
Coordinates
chr3:-:18806139..18808243
Molecular Weight (calculated)
60782.2 Da
IEP (calculated)
4.857
GRAVY (calculated)
-0.475
Length
542 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYMCTDSGN LMAIAQQLIK QKQQQQSQHQ QQEEQEQEPN PWPNPSFGFT LPGSGFSDPF QVTNDPGFHF PHLEHHQNAA VASEEFDSDE WMESLINGGD
101: ASQTNPDFPI YGHDPFVSFP SRLSAPSYLN RVNKDDSASQ QLPPPPASTA IWSPSPPSPQ HPPPPPPQPD FDLNQPIFKA IHDYARKPET KPDTLIRIKE
201: SVSESGDPIQ RVGYYFAEAL SHKETESPSS SSSSSLEDFI LSYKTLNDAC PYSKFAHLTA NQAILEATNQ SNNIHIVDFG IFQGIQWSAL LQALATRSSG
301: KPTRIRISGI PAPSLGDSPG PSLIATGNRL RDFAAILDLN FEFYPVLTPI QLLNGSSFRV DPDEVLVVNF MLELYKLLDE TATTVGTALR LARSLNPRIV
401: TLGEYEVSLN RVEFANRVKN SLRFYSAVFE SLEPNLDRDS KERLRVERVL FGRRIMDLVR SDDDNNKPGT RFGLMEEKEQ WRVLMEKAGF EPVKPSNYAV
501: SQAKLLLWNY NYSTLYSLVE SEPGFISLAW NNVPLLTVSS WR
101: ASQTNPDFPI YGHDPFVSFP SRLSAPSYLN RVNKDDSASQ QLPPPPASTA IWSPSPPSPQ HPPPPPPQPD FDLNQPIFKA IHDYARKPET KPDTLIRIKE
201: SVSESGDPIQ RVGYYFAEAL SHKETESPSS SSSSSLEDFI LSYKTLNDAC PYSKFAHLTA NQAILEATNQ SNNIHIVDFG IFQGIQWSAL LQALATRSSG
301: KPTRIRISGI PAPSLGDSPG PSLIATGNRL RDFAAILDLN FEFYPVLTPI QLLNGSSFRV DPDEVLVVNF MLELYKLLDE TATTVGTALR LARSLNPRIV
401: TLGEYEVSLN RVEFANRVKN SLRFYSAVFE SLEPNLDRDS KERLRVERVL FGRRIMDLVR SDDDNNKPGT RFGLMEEKEQ WRVLMEKAGF EPVKPSNYAV
501: SQAKLLLWNY NYSTLYSLVE SEPGFISLAW NNVPLLTVSS WR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.