Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49199 | Canola | plastid | 78.88 | 82.12 |
| CDY70213 | Canola | plastid | 80.09 | 81.96 |
| CDY47352 | Canola | plastid | 79.33 | 81.95 |
| Bra027620.1-P | Field mustard | plastid | 78.42 | 81.65 |
| CDY45974 | Canola | plastid | 79.64 | 81.24 |
| Bra026999.1-P | Field mustard | nucleus, plastid | 73.86 | 80.6 |
| VIT_02s0025g04000.t01 | Wine grape | plastid | 59.42 | 59.6 |
| GSMUA_Achr1P16230_001 | Banana | cytosol | 30.09 | 55.62 |
| Solyc08g080400.1.1 | Tomato | plastid | 56.84 | 55.08 |
| KRH57249 | Soybean | plastid | 55.47 | 54.97 |
| PGSC0003DMT400007879 | Potato | plastid | 56.69 | 54.93 |
| KRH03976 | Soybean | mitochondrion, nucleus | 55.62 | 54.71 |
| GSMUA_Achr7P05850_001 | Banana | mitochondrion | 44.98 | 45.54 |
| GSMUA_Achr1P18840_001 | Banana | cytosol | 41.34 | 44.3 |
| Os06t0127800-01 | Rice | plastid | 39.82 | 42.46 |
| HORVU7Hr1G010620.1 | Barley | cytosol | 35.87 | 41.92 |
| Zm00001d045507_P001 | Maize | plastid | 39.21 | 41.88 |
| TraesCS4A01G430600.1 | Wheat | plastid | 38.75 | 41.06 |
| TraesCS7D01G053600.1 | Wheat | plastid | 38.75 | 40.67 |
| EER87757 | Sorghum | mitochondrion | 39.36 | 40.66 |
| TraesCS7A01G059000.1 | Wheat | plastid | 38.45 | 40.35 |
| GSMUA_Achr4P19750_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 43.31 | 33.06 |
| AT5G41920.1 | Thale cress | cytosol | 19.15 | 31.11 |
| AT1G50420.1 | Thale cress | cytosol | 21.28 | 29.05 |
| AT1G55580.1 | Thale cress | plastid | 19.6 | 28.99 |
| AT1G66350.1 | Thale cress | cytosol | 21.88 | 28.18 |
| AT1G14920.1 | Thale cress | nucleus | 22.19 | 27.39 |
| AT3G03450.1 | Thale cress | nucleus | 21.12 | 25.41 |
| AT2G01570.1 | Thale cress | mitochondrion, nucleus | 22.49 | 25.21 |
| AT5G17490.1 | Thale cress | cytosol | 19.6 | 24.67 |
| AT3G50650.1 | Thale cress | cytosol | 20.21 | 24.54 |
| AT5G66770.1 | Thale cress | cytosol | 21.58 | 24.32 |
| AT3G54220.1 | Thale cress | nucleus, plastid | 21.73 | 21.9 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:842613 | UniProt:A0A178W2Y7 | ProteinID:AAG51600.1 | ProteinID:ANM59206.1 | ArrayExpress:AT1G63100 |
| EnsemblPlantsGene:AT1G63100 | RefSeq:AT1G63100 | TAIR:AT1G63100 | RefSeq:AT1G63100-TAIR-G | EnsemblPlants:AT1G63100.2 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009987 |
| GO:GO:0043565 | GO:GO:1900459 | InterPro:IPR005202 | RefSeq:NP_176498.1 | ProteinID:OAP12628.1 | PFAM:PF03514 |
| PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF16 | UniProt:Q9CAN3 | InterPro:Scarecrow-like_28 | InterPro:TF_GRAS |
| UniParc:UPI00000A605F | SEG:seg | : | : | : | : |
Description
SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
Coordinates
chr1:-:23399112..23402176
Molecular Weight (calculated)
73485.5 Da
IEP (calculated)
6.951
GRAVY (calculated)
-0.525
Length
658 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.