Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G430600.1 | Wheat | plastid | 93.96 | 85.19 |
| TraesCS7A01G059000.1 | Wheat | plastid | 94.85 | 85.17 |
| TraesCS7D01G053600.1 | Wheat | plastid | 94.14 | 84.53 |
| Os06t0127800-01 | Rice | plastid | 79.04 | 72.12 |
| Zm00001d045507_P001 | Maize | plastid | 76.73 | 70.13 |
| EER87757 | Sorghum | mitochondrion | 78.33 | 69.23 |
| GSMUA_Achr1P16230_001 | Banana | cytosol | 36.94 | 58.43 |
| GSMUA_Achr7P05850_001 | Banana | mitochondrion | 49.38 | 42.77 |
| GSMUA_Achr1P18840_001 | Banana | cytosol | 46.36 | 42.51 |
| VIT_02s0025g04000.t01 | Wine grape | plastid | 46.89 | 40.24 |
| PGSC0003DMT400007879 | Potato | plastid | 46.18 | 38.29 |
| Solyc08g080400.1.1 | Tomato | plastid | 46.0 | 38.14 |
| Bra026999.1-P | Field mustard | nucleus, plastid | 40.32 | 37.65 |
| KRH57249 | Soybean | plastid | 43.34 | 36.75 |
| KRH03976 | Soybean | mitochondrion, nucleus | 43.16 | 36.32 |
| CDY49199 | Canola | plastid | 40.5 | 36.08 |
| Bra027620.1-P | Field mustard | plastid | 40.32 | 35.92 |
| AT1G63100.2 | Thale cress | plastid | 41.92 | 35.87 |
| CDY47352 | Canola | plastid | 40.5 | 35.79 |
| CDY45974 | Canola | plastid | 40.67 | 35.5 |
| CDY70213 | Canola | plastid | 40.5 | 35.46 |
| HORVU3Hr1G088820.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 14.92 | 32.31 |
| GSMUA_Achr4P19750_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 48.13 | 31.44 |
| HORVU3Hr1G106260.1 | Barley | cytosol | 9.95 | 31.28 |
| HORVU1Hr1G069140.1 | Barley | cytosol | 24.16 | 29.12 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 15.45 | 27.62 |
| HORVU2Hr1G113480.1 | Barley | cytosol | 15.45 | 27.62 |
| HORVU6Hr1G033280.1 | Barley | cytosol | 21.14 | 26.68 |
| HORVU7Hr1G091000.1 | Barley | cytosol | 20.07 | 26.53 |
| HORVU5Hr1G045920.2 | Barley | cytosol | 27.35 | 26.32 |
| HORVU0Hr1G003230.2 | Barley | mitochondrion | 21.31 | 25.92 |
| HORVU3Hr1G088780.2 | Barley | cytosol | 24.33 | 25.8 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 21.31 | 25.26 |
| HORVU0Hr1G004640.1 | Barley | mitochondrion, nucleus, plastid | 21.49 | 25.26 |
| HORVU3Hr1G058100.1 | Barley | plastid | 25.22 | 25.22 |
| HORVU4Hr1G008930.3 | Barley | cytosol, mitochondrion | 15.45 | 24.65 |
| HORVU1Hr1G090800.1 | Barley | mitochondrion | 23.09 | 24.25 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 23.62 | 24.18 |
| HORVU4Hr1G008980.3 | Barley | mitochondrion, nucleus | 21.85 | 22.24 |
| HORVU4Hr1G006930.1 | Barley | nucleus | 24.33 | 22.17 |
| HORVU4Hr1G026010.3 | Barley | cytosol | 17.41 | 21.97 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G010620.1 | EnsemblPlantsGene:HORVU7Hr1G010620 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:Scarecrow-like_28 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF16 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | UniParc:UPI000B468B2A |
| UniProt:A0A287VHW3 | MapMan:15.5.12 | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:+:14944547..14946958
Molecular Weight (calculated)
60071.6 Da
IEP (calculated)
6.128
GRAVY (calculated)
-0.228
Length
563 amino acids
Sequence
(BLAST)
(BLAST)
001: AHPAPPVTQA VSWGAKPEPS VGDGGWEVRS RAVKRAHEEE AAAEEYGAPV VRAKRTRMGG DGDEVWFHQS IAGTAAMMQV AAGEGGEEEV AEEERKVFLV
101: PSAAAFPHGM VAAAGPSSLA AAKQEEYSKS PSHSSSSSGT DGGSSAMLPL DPAGVRSFVV PEAEREALEL VGALTACAEA LAGCQHDAAN YYLARLGETA
201: SPSGPTPLHR VAAYFAEALA LRAANMWPHV FDVTPPRELT DGAFHDDDDA LALRVLNSVT PIPRFLHFTL NERLIRAFDG HDRVHIIDFD IKQGLQWPSL
301: LQSLAARRPE PPAHVRITGV GSSRQELQDT GARLAHVAAG LGLAFEFHAV VDRLEDVRLW MLHVKRGERV AVNCILAAHR LLRDETGGAL SDFLGLVRST
401: GASVLLLGEH EAAGLNGGRW EARFARALQH YAAAFDAVGA AGLPPASAAR AKAEEMFARE IRNAVAFEGP DRSERHESFA GWRRRMEDGG FRNAGIGDRE
501: AMQGRMIARM FAPGKYGVHP QGDGEGLTLR WLDSPLYTVT AWTPAGDGAA VSASTTASHS LQS
101: PSAAAFPHGM VAAAGPSSLA AAKQEEYSKS PSHSSSSSGT DGGSSAMLPL DPAGVRSFVV PEAEREALEL VGALTACAEA LAGCQHDAAN YYLARLGETA
201: SPSGPTPLHR VAAYFAEALA LRAANMWPHV FDVTPPRELT DGAFHDDDDA LALRVLNSVT PIPRFLHFTL NERLIRAFDG HDRVHIIDFD IKQGLQWPSL
301: LQSLAARRPE PPAHVRITGV GSSRQELQDT GARLAHVAAG LGLAFEFHAV VDRLEDVRLW MLHVKRGERV AVNCILAAHR LLRDETGGAL SDFLGLVRST
401: GASVLLLGEH EAAGLNGGRW EARFARALQH YAAAFDAVGA AGLPPASAAR AKAEEMFARE IRNAVAFEGP DRSERHESFA GWRRRMEDGG FRNAGIGDRE
501: AMQGRMIARM FAPGKYGVHP QGDGEGLTLR WLDSPLYTVT AWTPAGDGAA VSASTTASHS LQS
001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGDDEEKVCF VPSEVISQPL PNWVDSVITE LAGIGDKDVE SSLPAAVKEA SGGSSTSASS
201: ESRSLSHRVP EPTNGSRNPY SHRGATEERT TGNINNNNNR NDLQRDFELV NLLTGCLDAI RSRNIAAINH FIARTGDLAS PRGRTPMTRL IAYYIEALAL
301: RVARMWPHIF HIAPPREFDR TVEDESGNAL RFLNQVTPIP KFIHFTANEM LLRAFEGKER VHIIDFDIKQ GLQWPSFFQS LASRINPPHH VRITGIGESK
401: LELNETGDRL HGFAEAMNLQ FEFHPVVDRL EDVRLWMLHV KEGESVAVNC VMQMHKTLYD GTGAAIRDFL GLIRSTNPIA LVLAEQEAEH NSEQLETRVC
501: NSLKYYSAMF DAIHTNLATD SLMRVKVEEM LFGREIRNIV ACEGSHRQER HVGFRHWRRM LEQLGFRSLG VSEREVLQSK MLLRMYGSDN EGFFNVERSD
601: EDNGGEGGRG GGVTLRWSEQ PLYTISAWTT GGN
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGDDEEKVCF VPSEVISQPL PNWVDSVITE LAGIGDKDVE SSLPAAVKEA SGGSSTSASS
201: ESRSLSHRVP EPTNGSRNPY SHRGATEERT TGNINNNNNR NDLQRDFELV NLLTGCLDAI RSRNIAAINH FIARTGDLAS PRGRTPMTRL IAYYIEALAL
301: RVARMWPHIF HIAPPREFDR TVEDESGNAL RFLNQVTPIP KFIHFTANEM LLRAFEGKER VHIIDFDIKQ GLQWPSFFQS LASRINPPHH VRITGIGESK
401: LELNETGDRL HGFAEAMNLQ FEFHPVVDRL EDVRLWMLHV KEGESVAVNC VMQMHKTLYD GTGAAIRDFL GLIRSTNPIA LVLAEQEAEH NSEQLETRVC
501: NSLKYYSAMF DAIHTNLATD SLMRVKVEEM LFGREIRNIV ACEGSHRQER HVGFRHWRRM LEQLGFRSLG VSEREVLQSK MLLRMYGSDN EGFFNVERSD
601: EDNGGEGGRG GGVTLRWSEQ PLYTISAWTT GGN
Arabidopsis Description
SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.