Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G314500.1 | Wheat | peroxisome | 92.72 | 93.93 |
| TraesCS1D01G303500.1 | Wheat | peroxisome | 93.36 | 89.34 |
| TraesCS1A01G304000.1 | Wheat | peroxisome | 93.58 | 89.0 |
| EES18409 | Sorghum | cytosol | 73.66 | 69.78 |
| Zm00001d038518_P001 | Maize | cytosol | 73.02 | 68.61 |
| Os05t0485400-00 | Rice | peroxisome | 72.16 | 67.4 |
| VIT_07s0005g03700.t01 | Wine grape | cytosol | 41.54 | 39.84 |
| PGSC0003DMT400087504 | Potato | nucleus | 40.04 | 38.48 |
| Solyc09g066450.1.1 | Tomato | cytosol | 40.26 | 37.6 |
| KRH19587 | Soybean | cytosol | 39.61 | 35.17 |
| KRH32212 | Soybean | cytosol | 38.97 | 33.89 |
| HORVU3Hr1G106260.1 | Barley | cytosol | 12.42 | 32.4 |
| HORVU0Hr1G003230.2 | Barley | mitochondrion | 31.69 | 31.97 |
| HORVU3Hr1G088820.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 16.49 | 29.62 |
| HORVU5Hr1G045920.2 | Barley | cytosol | 35.97 | 28.72 |
| HORVU7Hr1G091000.1 | Barley | cytosol | 25.27 | 27.7 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 18.2 | 26.98 |
| HORVU2Hr1G113480.1 | Barley | cytosol | 18.2 | 26.98 |
| HORVU6Hr1G033280.1 | Barley | cytosol | 25.05 | 26.23 |
| HORVU3Hr1G088780.2 | Barley | cytosol | 28.27 | 24.86 |
| HORVU7Hr1G010620.1 | Barley | cytosol | 29.12 | 24.16 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 24.41 | 24.0 |
| HORVU0Hr1G004640.1 | Barley | mitochondrion, nucleus, plastid | 23.98 | 23.38 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 27.41 | 23.27 |
| HORVU3Hr1G058100.1 | Barley | plastid | 28.05 | 23.27 |
| HORVU4Hr1G008930.3 | Barley | cytosol, mitochondrion | 17.34 | 22.95 |
| HORVU4Hr1G026010.3 | Barley | cytosol | 20.56 | 21.52 |
| HORVU1Hr1G090800.1 | Barley | mitochondrion | 23.98 | 20.9 |
| HORVU4Hr1G006930.1 | Barley | nucleus | 27.41 | 20.71 |
| HORVU4Hr1G008980.3 | Barley | mitochondrion, nucleus | 22.48 | 18.99 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G069140.1 | EnsemblPlantsGene:HORVU1Hr1G069140 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF22 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | UniParc:UPI000B465268 | UniProt:A0A287G3D3 |
| MapMan:15.5.12 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:483083478..483084934
Molecular Weight (calculated)
49619.2 Da
IEP (calculated)
6.375
GRAVY (calculated)
0.059
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: IQFHDHHQYM YGSSTGPFLP HHHGFISAEE DRCIGKVVPE LVEPATAGVA EEVEFGACKE GEDVAVVGQE RQEDAPKQGE EEKEAHGVRM IALLMECAVA
101: MSVGNLADAN GTLLELSQMA SPYAPSCGER LVAYFARAMA ARLMSSWVGV CAPVHPSSAS SWSGVHAAFR AFYNVAPFVR CAYLACNQAI LEAFRGKRLV
201: HVIDLDVVPG GALQWLSLLS ALAARPGGPP VLRVTGFGVS ASALHDAGTQ LAGLAIKLGM PFEFYAVVKR PGDVVDAVAD LPSRRPGEVV AVHWLRHALY
301: DAAGDDVVTM RLVRWLEPKV VTLVEQERGP AGGDGGQFLD RFVAALHHYS AVFDALGAAR PADGDASRHL VENSVLGREI GNVLAVAGPT RSGREMFGSW
401: QAELARNGFM RAGAAGGRAQ VLAGACPAGL GYTVADDHDG TVRLGWKGTP LYAVSTWTCC TTHHARP
101: MSVGNLADAN GTLLELSQMA SPYAPSCGER LVAYFARAMA ARLMSSWVGV CAPVHPSSAS SWSGVHAAFR AFYNVAPFVR CAYLACNQAI LEAFRGKRLV
201: HVIDLDVVPG GALQWLSLLS ALAARPGGPP VLRVTGFGVS ASALHDAGTQ LAGLAIKLGM PFEFYAVVKR PGDVVDAVAD LPSRRPGEVV AVHWLRHALY
301: DAAGDDVVTM RLVRWLEPKV VTLVEQERGP AGGDGGQFLD RFVAALHHYS AVFDALGAAR PADGDASRHL VENSVLGREI GNVLAVAGPT RSGREMFGSW
401: QAELARNGFM RAGAAGGRAQ VLAGACPAGL GYTVADDHDG TVRLGWKGTP LYAVSTWTCC TTHHARP
001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
Arabidopsis Description
SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.