Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G304000.1 | Wheat | cytosol, mitochondrion, nucleus | 91.86 | 91.67 |
| TraesCS2D01G302600.1 | Wheat | cytosol, mitochondrion, nucleus | 90.81 | 89.88 |
| TraesCS2B01G320700.1 | Wheat | cytosol, mitochondrion, nucleus | 91.02 | 89.71 |
| Os04t0432100-00 | Rice | nucleus | 64.93 | 61.71 |
| OQU81603 | Sorghum | cytosol | 45.3 | 60.61 |
| Zm00001d025133_P001 | Maize | cytosol | 59.5 | 57.69 |
| Zm00001d003657_P001 | Maize | cytosol, mitochondrion, nucleus | 59.5 | 57.23 |
| VIT_18s0076g00200.t01 | Wine grape | cytosol | 31.73 | 46.63 |
| GSMUA_Achr6P17870_001 | Banana | cytosol | 42.8 | 45.96 |
| GSMUA_Achr10P... | Banana | nucleus | 41.34 | 45.1 |
| KRH34954 | Soybean | cytosol | 37.16 | 43.95 |
| KRH08555 | Soybean | cytosol | 40.71 | 41.4 |
| PGSC0003DMT400023877 | Potato | cytosol | 35.28 | 41.02 |
| KRH70202 | Soybean | cytosol | 40.29 | 40.55 |
| KRG91825 | Soybean | nucleus | 39.04 | 40.22 |
| Solyc11g017100.1.1 | Tomato | cytosol | 36.74 | 36.97 |
| HORVU3Hr1G106260.1 | Barley | cytosol | 11.69 | 31.28 |
| HORVU7Hr1G091000.1 | Barley | cytosol | 24.01 | 27.0 |
| HORVU3Hr1G088820.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 14.2 | 26.15 |
| HORVU6Hr1G033280.1 | Barley | cytosol | 23.59 | 25.34 |
| HORVU0Hr1G003230.2 | Barley | mitochondrion | 23.59 | 24.41 |
| HORVU1Hr1G069140.1 | Barley | cytosol | 23.38 | 23.98 |
| HORVU5Hr1G045920.2 | Barley | cytosol | 27.97 | 22.91 |
| HORVU3Hr1G058100.1 | Barley | plastid | 26.72 | 22.74 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 14.82 | 22.54 |
| HORVU2Hr1G113480.1 | Barley | cytosol | 14.82 | 22.54 |
| HORVU4Hr1G008930.3 | Barley | cytosol, mitochondrion | 16.49 | 22.38 |
| HORVU7Hr1G010620.1 | Barley | cytosol | 25.26 | 21.49 |
| HORVU1Hr1G090800.1 | Barley | mitochondrion | 23.38 | 20.9 |
| HORVU4Hr1G008980.3 | Barley | mitochondrion, nucleus | 23.8 | 20.61 |
| HORVU3Hr1G088780.2 | Barley | cytosol | 21.92 | 19.77 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 22.34 | 19.45 |
| HORVU4Hr1G006930.1 | Barley | nucleus | 24.63 | 19.09 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 18.16 | 18.32 |
| HORVU4Hr1G026010.3 | Barley | cytosol | 16.91 | 18.16 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G004640.1 | EnsemblPlantsGene:HORVU0Hr1G004640 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF19 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | UniParc:UPI00029699EE | UniProt:M0X0G7 |
| MapMan:15.5.12 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchrUn:+:26283817..26285757
Molecular Weight (calculated)
51312.4 Da
IEP (calculated)
5.988
GRAVY (calculated)
-0.215
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLTLSLGVN GGGAAAKKRK VMDGVGDVGV LGAADGCDRA TVMRLLQARD RMVKVELDHD VDGDVSGCGA SPLMRLLLSS AVAGEVGDTH AAAVALQEVY
101: RHASFRGGDP VQRVAAYFAD ALASRLLLSP QPAQATTRQE QFLAFTMFYQ ASPLYQFAHF TANQAIMEAF EAGGTRRLHV VDFDVSFGFQ WPSLIQSLSD
201: AAATSSSLSS HDDSGDSCDE PVSLRITGFG ASADELRDTE ARLARFADGC PNLRFEFEGV LNSGPEDDGR HDRIKTDPAA TVVVNLVFPA AQNARAGSWD
301: PRSALAHIWS LSPSLVFLID KVDEGAGRCG GSASLLPRFA ANLRYYAAVF ESLHECLPAD SAERIAIEKD HLGVEISDAM ATLDRRRHDG DRAADQNQTS
401: RGWKERLESA GFEDARLSSR TVSQAKLLLK MKSGGCGGGG FRVMEAGDGK AMALGWRDRA LVTASAWRPC RRSVGKNEP
101: RHASFRGGDP VQRVAAYFAD ALASRLLLSP QPAQATTRQE QFLAFTMFYQ ASPLYQFAHF TANQAIMEAF EAGGTRRLHV VDFDVSFGFQ WPSLIQSLSD
201: AAATSSSLSS HDDSGDSCDE PVSLRITGFG ASADELRDTE ARLARFADGC PNLRFEFEGV LNSGPEDDGR HDRIKTDPAA TVVVNLVFPA AQNARAGSWD
301: PRSALAHIWS LSPSLVFLID KVDEGAGRCG GSASLLPRFA ANLRYYAAVF ESLHECLPAD SAERIAIEKD HLGVEISDAM ATLDRRRHDG DRAADQNQTS
401: RGWKERLESA GFEDARLSSR TVSQAKLLLK MKSGGCGGGG FRVMEAGDGK AMALGWRDRA LVTASAWRPC RRSVGKNEP
001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
Arabidopsis Description
SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.