Factsheet for Solyc11g017100.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023877	Potato	cytosol	82.35	95.15
VIT_18s0076g00200.t01	Wine grape	cytosol	48.11	70.25
KRH34954	Soybean	cytosol	52.1	61.23
KRG91825	Soybean	nucleus	55.67	56.99
KRH08555	Soybean	cytosol	55.88	56.48
KRH70202	Soybean	cytosol	55.67	55.67
GSMUA_Achr6P17870_001	Banana	cytosol	45.8	48.88
GSMUA_Achr10P...	Banana	nucleus	44.33	48.06
HORVU0Hr1G004640.1	Barley	mitochondrion, nucleus, plastid	36.97	36.74
OQU81603	Sorghum	cytosol	27.52	36.59
TraesCS2A01G304000.1	Wheat	cytosol, mitochondrion, nucleus	36.13	35.83
Zm00001d025133_P001	Maize	cytosol	37.18	35.83
TraesCS2B01G320700.1	Wheat	cytosol, mitochondrion, nucleus	36.34	35.6
TraesCS2D01G302600.1	Wheat	cytosol, mitochondrion, nucleus	36.13	35.54
Zm00001d003657_P001	Maize	cytosol, mitochondrion, nucleus	36.97	35.34
Os04t0432100-00	Rice	nucleus	35.29	33.33
Solyc07g043330.1.1	Tomato	plastid	24.58	27.08
Solyc07g066250.1.1	Tomato	nucleus	23.74	26.4
Solyc12g099900.1.1	Tomato	nucleus	25.21	25.64
Solyc09g066450.1.1	Tomato	cytosol	25.84	24.6
Solyc01g008910.2.1	Tomato	cytosol	24.58	24.58
Solyc03g110950.1.1	Tomato	cytosol	25.42	22.83
Solyc10g086380.1.1	Tomato	nucleus	24.37	22.61
Solyc02g094340.1.1	Tomato	nucleus	30.04	21.03
Solyc11g011260.1.1	Tomato	nucleus	25.0	20.24
Solyc10g086370.1.1	Tomato	nucleus	21.22	19.8
Solyc02g085340.1.1	Tomato	cytosol	25.0	19.54
Solyc08g080400.1.1	Tomato	plastid	25.0	17.53
Solyc10g074680.1.1	Tomato	cytosol	27.31	15.74

Protein Annotations

MapMan:15.5.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR005202	UniProt:K4D6L3	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF19
EnsemblPlantsGene:Solyc11g017100.1	EnsemblPlants:Solyc11g017100.1.1	InterPro:TF_GRAS	UniParc:UPI000276A759	SEG:seg	:

Description

No Description!

Coordinates

chr11:-:7898735..7900165

Molecular Weight (calculated)

54680.8 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.251

Length

476 amino acids

Sequence
(BLAST)

001: MGDIVDHEEE LLSLRLAIVN DSSCCDNHIN KKIIKKRKRR ELMMNFINTW DLNESNCEGK ILSLLELREM MLKNDVKKKG HIINDGKGLH LIHSLLISAT
101: SIDENSMNLA IENLHELYQN VTLFGDSIQR MAAYFADGLI ARLLTRKSPF YDMIMKPPTQ EEEFLAFTQF YKVSPFYQFA HFTSNQAILE VFEKELEYNN
201: GLLHVIDFFD ISYGFQWPSL IQSLSENSTT LNRISLKITG YGRTIDELRE TETRLVSFAK GFRNLSFEFQ GVLSGYKLSN LTKRKNETLA INLIFHLNSL
301: STYSKISKTL KEVHDLCPSI VTIVEQEGCK IPKTNFMPRF MDSLHYFAAM FDSLDDCLPI DSIERLSIEK NHLGKEIKNV LNYDNSSSRY NDDNEQMETC
401: KGRMESHGFI GVPLSCKNIM QAKLLMKIRS YSNSTIQIDG GINGGFRVFE IEDPRAISLA WQDRSIVTAS AWHCVL

Best Arabidopsis Sequence Match ( AT2G04890.1 )
(BLAST)

001: MDNVRGSIML QPLPEIAESI DDAICHELSM WPDDAKDLLL IVEAISRGDL KLVLVACAKA VSENNLLMAR WCMGELRGMV SISGEPIQRL GAYMLEGLVA
101: RLAASGSSIY KSLQSREPES YEFLSYVYVL HEVCPYFKFG YMSANGAIAE AMKDEERIHI IDFQIGQGSQ WIALIQAFAA RPGGAPNIRI TGVGDGSVLV
201: TVKKRLEKLA KKFDVPFRFN AVSRPSCEVE VENLDVRDGE ALGVNFAYML HHLPDESVSM ENHRDRLLRM VKSLSPKVVT LVEQECNTNT SPFLPRFLET
301: LSYYTAMFES IDVMLPRNHK ERINIEQHCM ARDVVNIIAC EGAERIERHE LLGKWKSRFS MAGFEPYPLS SIISATIRAL LRDYSNGYAI EERDGALYLG
401: WMDRILVSSC AWK

Arabidopsis Description

SCL21SCL21 [Source:UniProtKB/TrEMBL;Acc:A0A178VWV4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.