Factsheet for Os04t0432100-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G304000.1	Wheat	cytosol, mitochondrion, nucleus	62.9	66.04
TraesCS2D01G302600.1	Wheat	cytosol, mitochondrion, nucleus	62.5	65.08
HORVU0Hr1G004640.1	Barley	mitochondrion, nucleus, plastid	61.71	64.93
TraesCS2B01G320700.1	Wheat	cytosol, mitochondrion, nucleus	62.3	64.61
OQU81603	Sorghum	cytosol	44.84	63.13
Zm00001d025133_P001	Maize	cytosol	59.52	60.73
Zm00001d003657_P001	Maize	cytosol, mitochondrion, nucleus	58.53	59.24
VIT_18s0076g00200.t01	Wine grape	cytosol	29.76	46.01
GSMUA_Achr6P17870_001	Banana	cytosol	39.48	44.62
KRH34954	Soybean	cytosol	34.92	43.46
GSMUA_Achr10P...	Banana	nucleus	36.9	42.37
PGSC0003DMT400023877	Potato	cytosol	32.74	40.05
KRH08555	Soybean	cytosol	36.9	39.49
KRG91825	Soybean	nucleus	36.11	39.14
KRH70202	Soybean	cytosol	36.31	38.45
Solyc11g017100.1.1	Tomato	cytosol	33.33	35.29
Os06t0610350-01	Rice	cytosol	23.81	27.21
Os07t0567700-02	Rice	cytosol	24.6	27.13
Os01t0948200-00	Rice	cytosol	23.02	26.24
Os01t0646300-01	Rice	cytosol	24.8	25.25
Os06t0211500-00	Rice	cytosol	9.52	25.13
Os02t0197300-00	Rice	cytosol	22.22	25.11
Os05t0574900-01	Rice	plasma membrane	23.02	23.2
Os03t0723000-01	Rice	nucleus	25.79	22.49
Os12t0138100-00	Rice	cytosol	21.63	22.15
Os11t0141500-00	Rice	cytosol	21.43	21.95
Os05t0485400-00	Rice	peroxisome	21.23	21.4
Os06t0127800-01	Rice	plastid	24.21	19.77
Os11t0141700-00	Rice	cytosol	18.65	18.58
Os03t0707600-01	Rice	nucleus	23.02	18.56
Os11t0124300-01	Rice	nucleus, plastid	23.81	18.43
Os12t0138200-00	Rice	cytosol	18.65	18.43
Os12t0122000-01	Rice	plastid	23.81	18.18
Os05t0378200-00	Rice	cytosol	19.44	17.79
Os05t0378500-00	Rice	plastid	17.46	15.71
Os12t0138166-00	Rice	endoplasmic reticulum, extracellular	1.19	1.7
Os11t0141550-01	Rice	cytosol	0.0	0.0

Protein Annotations

MapMan:15.5.12	ProteinID:BAS89271.1	ProteinID:CAE03038.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	EnsemblPlantsGene:Os04g0432100	EnsemblPlants:Os04t0432100-00	PFAM:PF03514
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF19	UniProt:Q7XQP2	InterPro:TF_GRAS	UniParc:UPI00001B14EA
SEG:seg	:	:	:	:	:

Description

Transcription factor GRAS domain containing protein. (Os04t0432100-00)

Coordinates

chr4:-:21424187..21425721

Molecular Weight (calculated)

52582.9 Da

IEP (calculated)

8.421

GRAVY (calculated)

-0.224

Length

504 amino acids

Sequence
(BLAST)

001: MNLKLSLAID GGGGGDAAAA VAKKSKVVGG GAVVVDGVGS SAICGGDRGS RVRDRMVKKA EEFDHENGMA ATSSDGGGGG GGGMELVRLL LSAVAAGEAG
101: DARAAAAALR EVDRRASCRG GGDPAQRVAA CYAAALAPRL AAGLRPARSS PAAPAAARAE QFLAYTMFYQ ASPFYQFAHF TANQAIVEAF ESGGRRRLHV
201: VDFDVSYGFQ WPSLIQSLSD AAAAATSSSS HDDDDNGGGC GDGPVSLRIT GFGASADELR ETEARLRRFA AGCPNLRFEF EGILNNGSNT RHDCTRIDDD
301: ATVVVNLVFP ASSREACAAT RMAYINSLNP SMVFLIEKHD GGGGLTGGDN TTTGRSASLL PRFAANLRYF AAVFDSLHEC LPADSAERLA IERDHLGREI
401: ADAVASLDHQ HRRRHGGGGG GGDHAAASWN WKAAMEGAGL DGVKLSSRTV SQAKLLLKMK SGCGGGGFRV VEGDGGMAMS LAWRDMALAT ATLWRRRRRR
501: RRCR

Best Arabidopsis Sequence Match ( AT5G41920.1 )
(BLAST)

001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD

Arabidopsis Description

SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.