Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0662600-02 | |
| Os05t0568100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50420.1 | Os01t0662600-02 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | Os05t0568100-01 | AT4G22220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0948200-00 | Rice | cytosol | 70.16 | 30.32 |
| CDY45059 | Canola | cytosol | 45.03 | 28.29 |
| CDY68881 | Canola | cytosol | 34.03 | 26.64 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 49.21 | 21.08 |
| Bra014251.1-P | Field mustard | cytosol | 45.03 | 19.33 |
| Solyc01g008910.2.1 | Tomato | cytosol | 47.64 | 19.12 |
| PGSC0003DMT400058477 | Potato | cytosol | 47.12 | 19.07 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 47.12 | 19.03 |
| CDY03601 | Canola | cytosol | 43.98 | 18.71 |
| Bra018848.1-P | Field mustard | cytosol | 42.93 | 18.64 |
| PGSC0003DMT400011839 | Potato | cytosol | 45.55 | 18.59 |
| CDY22795 | Canola | cytosol, plastid | 42.41 | 18.24 |
| VIT_13s0019g01220.t01 | Wine grape | cytosol | 45.55 | 18.2 |
| Solyc12g099900.1.1 | Tomato | nucleus | 44.5 | 18.16 |
| AT1G50420.1 | Thale cress | cytosol | 45.55 | 18.05 |
| KRH29080 | Soybean | cytosol | 42.93 | 18.02 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 42.93 | 18.02 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 42.93 | 17.3 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 40.84 | 16.77 |
| KRH62871 | Soybean | cytosol | 37.17 | 16.03 |
| KRH27822 | Soybean | nucleus, plastid | 39.27 | 15.86 |
| KRH29971 | Soybean | cytosol | 36.13 | 15.61 |
| Os11t0141500-00 | Rice | cytosol | 37.7 | 14.63 |
| Os12t0138100-00 | Rice | cytosol | 37.17 | 14.43 |
| Os12t0138200-00 | Rice | cytosol | 32.98 | 12.35 |
| Os11t0141700-00 | Rice | cytosol | 32.46 | 12.25 |
| Os05t0378200-00 | Rice | cytosol | 33.51 | 11.62 |
| Os07t0567700-02 | Rice | cytosol | 27.75 | 11.6 |
| Os06t0610350-01 | Rice | cytosol | 26.18 | 11.34 |
| Os01t0646300-01 | Rice | cytosol | 28.8 | 11.11 |
| Os02t0197300-00 | Rice | cytosol | 23.56 | 10.09 |
| Os03t0723000-01 | Rice | nucleus | 30.37 | 10.03 |
| Os05t0574900-01 | Rice | plasma membrane | 26.18 | 10.0 |
| Os04t0432100-00 | Rice | nucleus | 25.13 | 9.52 |
| Os05t0378500-00 | Rice | plastid | 26.7 | 9.11 |
| Os03t0707600-01 | Rice | nucleus | 28.8 | 8.8 |
| Os05t0485400-00 | Rice | peroxisome | 22.51 | 8.6 |
| CDY37137 | Canola | plastid | 42.93 | 8.6 |
| Os11t0124300-01 | Rice | nucleus, plastid | 26.7 | 7.83 |
| GSMUA_Achr11P... | Banana | cytosol | 45.03 | 7.8 |
| Os12t0122000-01 | Rice | plastid | 26.7 | 7.73 |
| Os06t0127800-01 | Rice | plastid | 22.51 | 6.97 |
| Os11t0141550-01 | Rice | cytosol | 0.0 | 0.0 |
| Os12t0138166-00 | Rice | endoplasmic reticulum, extracellular | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.12 | UniProt:A0A0N7KLR4 | ProteinID:BAS96745.1 | GO:GO:0000989 | GO:GO:0003674 | GO:GO:0003712 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 |
| EnsemblPlantsGene:Os06g0211500 | EnsemblPlants:Os06t0211500-00 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF13 |
| InterPro:Scarecrow-like_3 | InterPro:TF_GRAS | UniParc:UPI000393BA5A | SEG:seg | : | : |
Description
Similar to GRAS family transcription factor containing protein. (Os06t0211500-00)
Coordinates
chr6:+:5691753..5694649
Molecular Weight (calculated)
21417.9 Da
IEP (calculated)
9.108
GRAVY (calculated)
-0.363
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: GLSLKVMVVT EQEVSHNAAG LTERFVEALN YYAALFDCLE VGGARGSVER TRVERWLLGE EIKNIVACDG GERRERHERL EGAGFGRVPL SYYALLQARR
101: VAQGLGCDGF KVREEKGNFF LCWQDRALFS VSAWRGRRFA ALLPLPPSTP LPCSRVIATL LSSPPPPCSP LHPYCPERRE RMKGEKKGKR E
101: VAQGLGCDGF KVREEKGNFF LCWQDRALFS VSAWRGRRFA ALLPLPPSTP LPCSRVIATL LSSPPPPCSP LHPYCPERRE RMKGEKKGKR E
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.