Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0662600-02 | |
| Os05t0568100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50420.1 | Os01t0662600-02 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | Os05t0568100-01 | AT4G22220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G113480.1 | Barley | cytosol | 27.95 | 48.89 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 27.95 | 48.89 |
| TraesCS2D01G534700.1 | Wheat | cytosol | 26.13 | 45.86 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 25.23 | 44.27 |
| TraesCS2D01G055700.1 | Wheat | extracellular, golgi, mitochondrion, plastid | 24.86 | 43.91 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 31.03 | 39.77 |
| Os01t0948200-00 | Rice | cytosol | 30.67 | 38.24 |
| CDY45059 | Canola | cytosol | 20.33 | 36.84 |
| CDY68881 | Canola | cytosol | 15.97 | 36.07 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 30.67 | 35.58 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 30.49 | 35.44 |
| TraesCSU01G014000.1 | Wheat | cytosol | 18.33 | 34.35 |
| OQU77884 | Sorghum | plasma membrane | 28.31 | 34.29 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 28.31 | 33.77 |
| Os06t0211500-00 | Rice | cytosol | 11.62 | 33.51 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 26.68 | 32.96 |
| OQU77885 | Sorghum | cytosol | 28.49 | 32.57 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 26.13 | 30.44 |
| Os11t0141500-00 | Rice | cytosol | 27.04 | 30.28 |
| Os05t0378500-00 | Rice | plastid | 30.67 | 30.18 |
| Os12t0138100-00 | Rice | cytosol | 26.86 | 30.08 |
| Bra018848.1-P | Field mustard | cytosol | 23.96 | 30.0 |
| Bra014251.1-P | Field mustard | cytosol | 23.96 | 29.66 |
| CDY22795 | Canola | cytosol, plastid | 23.77 | 29.5 |
| CDY03601 | Canola | cytosol | 23.96 | 29.4 |
| Solyc12g099900.1.1 | Tomato | nucleus | 24.68 | 29.06 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 23.96 | 29.01 |
| KRH62871 | Soybean | cytosol | 23.23 | 28.89 |
| VIT_13s0019g01220.t01 | Wine grape | cytosol | 25.05 | 28.87 |
| PGSC0003DMT400011839 | Potato | cytosol | 24.32 | 28.63 |
| Solyc01g008910.2.1 | Tomato | cytosol | 24.68 | 28.57 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 24.5 | 28.48 |
| PGSC0003DMT400058477 | Potato | cytosol | 24.32 | 28.39 |
| KRH29080 | Soybean | cytosol | 23.41 | 28.35 |
| KRH29971 | Soybean | cytosol | 22.5 | 28.05 |
| Os12t0138200-00 | Rice | cytosol | 25.77 | 27.84 |
| AT1G50420.1 | Thale cress | cytosol | 23.96 | 27.39 |
| Os11t0141700-00 | Rice | cytosol | 24.68 | 26.88 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 22.14 | 26.24 |
| KRH27822 | Soybean | nucleus, plastid | 21.6 | 25.16 |
| Os07t0567700-02 | Rice | cytosol | 20.15 | 24.29 |
| Os01t0646300-01 | Rice | cytosol | 21.6 | 24.04 |
| Os06t0610350-01 | Rice | cytosol | 18.33 | 22.9 |
| Os02t0197300-00 | Rice | cytosol | 18.33 | 22.65 |
| Os05t0574900-01 | Rice | plasma membrane | 20.33 | 22.4 |
| Os05t0485400-00 | Rice | peroxisome | 19.06 | 21.0 |
| Os04t0432100-00 | Rice | nucleus | 17.79 | 19.44 |
| Os06t0127800-01 | Rice | plastid | 20.69 | 18.48 |
| Os03t0723000-01 | Rice | nucleus | 19.24 | 18.34 |
| Os03t0707600-01 | Rice | nucleus | 20.15 | 17.76 |
| Os11t0124300-01 | Rice | nucleus, plastid | 20.51 | 17.36 |
| Os12t0122000-01 | Rice | plastid | 20.33 | 16.97 |
| CDY37137 | Canola | plastid | 23.96 | 13.84 |
| GSMUA_Achr11P... | Banana | cytosol | 24.68 | 12.34 |
| Os12t0138166-00 | Rice | endoplasmic reticulum, extracellular | 1.27 | 1.98 |
| Os11t0141550-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.12 | ProteinID:AAT93891.1 | ProteinID:AAU10731.1 | ProteinID:BAS93742.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR005202 | EnsemblPlantsGene:Os05g0378200 | EnsemblPlants:Os05t0378200-00 |
| PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF123 | UniProt:Q6AUP1 | InterPro:TF_GRAS |
| UniParc:UPI0000403634 | SEG:seg | : | : | : | : |
Description
Transcription factor GRAS domain containing protein. (Os05t0378200-00)
Coordinates
chr5:+:18234846..18236501
Molecular Weight (calculated)
56284.1 Da
IEP (calculated)
5.320
GRAVY (calculated)
0.197
Length
551 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVEIPRLAL GGGGGGAGGE RLPAAGEDSA PAATNAGKRP VVGLGFGSSL AAMAAAAAAG IQPDAFALGG PAEYPAGDGE RDVLMVSFLR SIAAFLADGT
101: CQMQVNDGLS CVVDLAGGDA DGGGVGEGRS AQRLASAFAE ALALRFILPC DGVCRSLHLT RAPPPPAVSA ARQGFRAMCP FVRLAAAAAN LSIAEVMEAE
201: RAVVHVVDLG GGVDANQWVE LVRLVAARPG GPPGLLRLTV VNESEDFLSA VAAYVAAEAQ RLDLSLQFHP VLSSIEELSA TATGSIGSRL VVIPGQPLAV
301: VANLQIHRLL AFPDYVDGVA SRRPAAEQSG SSQHTMTTAT KTKADALLRA IRDLNPKLVV LTENEADHNV AELGARVWNA LNYYAALFDA LEASSTPPAA
401: VPPHERACVE RWVLGEEIKD IVVREGTGRR ERHETLGRWA ERMVAAGFSP VTAARALAST ETLAQQMVAA GGGGAGAGVL RAAHGGGCFP VICWCDVPVF
501: SVSTWTARRV LVPAPPLWPP AAAGGAGPSG SGYGGDGPST ASSSAAMWWV G
101: CQMQVNDGLS CVVDLAGGDA DGGGVGEGRS AQRLASAFAE ALALRFILPC DGVCRSLHLT RAPPPPAVSA ARQGFRAMCP FVRLAAAAAN LSIAEVMEAE
201: RAVVHVVDLG GGVDANQWVE LVRLVAARPG GPPGLLRLTV VNESEDFLSA VAAYVAAEAQ RLDLSLQFHP VLSSIEELSA TATGSIGSRL VVIPGQPLAV
301: VANLQIHRLL AFPDYVDGVA SRRPAAEQSG SSQHTMTTAT KTKADALLRA IRDLNPKLVV LTENEADHNV AELGARVWNA LNYYAALFDA LEASSTPPAA
401: VPPHERACVE RWVLGEEIKD IVVREGTGRR ERHETLGRWA ERMVAAGFSP VTAARALAST ETLAQQMVAA GGGGAGAGVL RAAHGGGCFP VICWCDVPVF
501: SVSTWTARRV LVPAPPLWPP AAAGGAGPSG SGYGGDGPST ASSSAAMWWV G
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.