Factsheet for Os05t0574900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
extracellular 2
golgi 2
plasma membrane 3
endoplasmic reticulum 2
vacuole 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	peroxisome
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G342800.1	Wheat	cytosol	47.6	54.09
TraesCS5A01G511900.1	Wheat	cytosol	46.6	53.44
TraesCS1A01G413800.1	Wheat	cytosol, nucleus, plastid	49.8	51.66
TraesCS4D01G338800.1	Wheat	cytoskeleton, cytosol, peroxisome, plastid	49.6	50.72
Os01t0646300-01	Rice	cytosol	48.8	49.29
TraesCS1D01G421200.1	Wheat	cytosol	50.0	49.21
TraesCS1B01G443800.1	Wheat	cytosol	49.6	47.97
KRG92263	Soybean	cytosol	38.0	47.62
Zm00001d009646_P001	Maize	plastid	44.8	47.16
HORVU1Hr1G090800.1	Barley	mitochondrion	50.2	46.83
KXG23987	Sorghum	cytosol	48.0	45.71
KRH34544	Soybean	cytosol	38.6	39.55
KRH54840	Soybean	cytosol	39.6	39.21
KRH63032	Soybean	cytosol	39.2	38.97
VIT_11s0016g04630.t01	Wine grape	plastid	39.4	37.03
GSMUA_Achr6P34550_001	Banana	mitochondrion, nucleus, peroxisome, plastid	42.4	34.7
Os01t0948200-00	Rice	cytosol	27.4	31.0
Os03t0707600-01	Rice	nucleus	34.4	27.52
Os06t0211500-00	Rice	cytosol	10.0	26.18
Os06t0610350-01	Rice	cytosol	23.0	26.08
Os07t0567700-02	Rice	cytosol	23.6	25.82
Os11t0141500-00	Rice	cytosol	24.8	25.2
Os12t0138100-00	Rice	cytosol	24.8	25.2
Os02t0197300-00	Rice	cytosol	22.4	25.11
Os05t0485400-00	Rice	peroxisome	23.6	23.6
Os12t0138200-00	Rice	cytosol	23.8	23.33
Os04t0432100-00	Rice	nucleus	23.2	23.02
Os11t0141700-00	Rice	cytosol	23.2	22.92
Os03t0723000-01	Rice	nucleus	24.8	21.45
Os06t0127800-01	Rice	plastid	26.4	21.39
Os05t0378200-00	Rice	cytosol	22.4	20.33
Os11t0124300-01	Rice	nucleus, plastid	25.8	19.82
Os12t0122000-01	Rice	plastid	26.0	19.7
Os05t0378500-00	Rice	plastid	21.4	19.11
Os11t0141550-01	Rice	cytosol	0.4	1.55
Os12t0138166-00	Rice	endoplasmic reticulum, extracellular	0.8	1.13

Protein Annotations

MapMan:11.6.2.2	MapMan:15.5.12	EntrezGene:4339687	ProteinID:AAT69589.1	EMBL:AK107256	ProteinID:BAF18308.1
ProteinID:BAS95467.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009719	GO:GO:0009723
GO:GO:0009737	GO:GO:0009791	GO:GO:0009863	GO:GO:0009867	GO:GO:0009938	GO:GO:0009987
GO:GO:0010187	GO:GO:0042538	GO:GO:0043565	GO:GO:2000033	GO:GO:2000377	InterPro:IPR005202
EnsemblPlantsGene:Os05g0574900	EnsemblPlants:Os05t0574900-01	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF128
UniProt:Q6F368	InterPro:TF_GRAS	UniParc:UPI00003BF56B	RefSeq:XP_015638486.1	SEG:seg	:

Description

SLENDER RICE LIKE 2GRAS transcription factor domain containing protein. (Os05t0574900-01)

Coordinates

chr5:+:28640262..28641986

Molecular Weight (calculated)

52998.0 Da

IEP (calculated)

6.295

GRAVY (calculated)

-0.047

Length

500 amino acids

Sequence
(BLAST)

001: MAQFGGFGGW SAMDVAAAAA AALGNVSGAV YHADPAAAVY ASLVPGMAVV PGRAPPSAVQ IEAARRWKEL EKMALRSVNL MVTCAGAIQA GDYAAAAGSL
101: SDAREIFAKM PTTRTGIGRV LTHFADALAE RLFPAFPQSA PPPPPPRGEQ RELFRGFYEA GPYLKFAHLA ANQAILEAFE GCNSVHVIDF ALTDGIQWPS
201: LIQALAVRPG GPPFLRITGI GPHAAGNRDE LRDVGLRLAE FARSCSVPFA FRGIAADQLD GLRPWMFQVA PGEAVAINSV LQLHRLLVDQ DAAAAASFPA
301: PIDGVLDWVA SMNPRVFTVV EQEADHNKSS LLERFTNSLF YYASMFDSLE AISRHGGGDG AGNPLAEAYL QGEIADIVSR EGSSRVERHE QMPRWVERLR
401: RGGMTQLPLG ATGLWQAAMQ LREFSGAGFG VQENGGFLTL TWHSQRLYSA SAWRATAGKK MTMMASGAAD AMEESQNSNT NGGGGGSSGG GHGALNQIMQ

Best Arabidopsis Sequence Match ( AT2G01570.1 )
(BLAST)

001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY

Arabidopsis Description

RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.